PDB entry 6vlk

View 6vlk on RCSB PDB site
Description: A varicella-zoster virus glycoprotein
Class: viral protein
Keywords: viral membrane glycoprotein, VIRAL PROTEIN
Deposited on 2020-01-24, released 2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope glycoprotein B
    Species: Varicella-zoster virus (strain Oka vaccine) [TaxId:341980]
    Gene: gB, ORF31
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4JR05 (Start-735)
      • engineered mutation (179)
      • engineered mutation (184)
    Domains in SCOPe 2.08: d6vlka_
  • Chain 'B':
    Compound: Envelope glycoprotein B
    Species: Varicella-zoster virus (strain Oka vaccine) [TaxId:341980]
    Gene: gB, ORF31
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4JR05 (Start-735)
      • engineered mutation (179)
      • engineered mutation (184)
    Domains in SCOPe 2.08: d6vlkb_
  • Heterogens: BMA, MAN, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6vlkA (A:)
mspcgyyskwrnrdrpeyrrnlrfrrffssihpnaaagsgfngpgvfitsvtgvwlcflc
ifsmfvtavvsvspssfyeslqveptqseditrsahlgdgdeireaihksqdaetkptfy
vcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdvivstag
agssgtqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedknpqdmpl
iaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfglstgdi
iymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtphltvgwn
wkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihlsqcvke
earaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnslarlylqelvrentnh
spqkhptrntgsggsvpvelranrtitttssvefamlqftydhiqehvnemlarissswc
qlqnreralwsglfpinpsalastildqrvkarilgdvisvsncpelgsdtriilqnsmr
vsgsttrcysrplisivslngsgtvegqlgtdnelimsrdllepcvanhkryflfghhyv
yyedyryvreiavhdvgmistyvdlnltllkdrefmplqvytrdelrdtglldyseiqrr
nqmhslrfydidkvvqgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6vlkA (A:)
tkptfyvcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdv
ivstagagssgtqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedkn
pqdmpliaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfg
lstgdiiymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtph
ltvgwnwkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihl
sqcvkeearaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnsnrtitttssv
efamlqftydhiqehvnemlarissswcqlqnreralwsglfpinpsalastildqrvka
rilgdvisvsncpelgsdtriilqnsmrvsgsttrcysrplisivslngsgtvegqlgtd
nelimsrdllepcvanhkryflfghhyvyyedyryvreiavhdvgmistyvdlnltllkd
refmplqvytrdelrdtglldyseiqrrnqmhslrfydidkvvq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vlkB (B:)
mspcgyyskwrnrdrpeyrrnlrfrrffssihpnaaagsgfngpgvfitsvtgvwlcflc
ifsmfvtavvsvspssfyeslqveptqseditrsahlgdgdeireaihksqdaetkptfy
vcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdvivstag
agssgtqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedknpqdmpl
iaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfglstgdi
iymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtphltvgwn
wkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihlsqcvke
earaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnslarlylqelvrentnh
spqkhptrntgsggsvpvelranrtitttssvefamlqftydhiqehvnemlarissswc
qlqnreralwsglfpinpsalastildqrvkarilgdvisvsncpelgsdtriilqnsmr
vsgsttrcysrplisivslngsgtvegqlgtdnelimsrdllepcvanhkryflfghhyv
yyedyryvreiavhdvgmistyvdlnltllkdrefmplqvytrdelrdtglldyseiqrr
nqmhslrfydidkvvqgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6vlkB (B:)
kptfyvcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdvi
vstagagssgtqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedknp
qdmpliaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfgl
stgdiiymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtphl
tvgwnwkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihls
qcvkeearaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnsnrtitttssve
famlqftydhiqehvnemlarissswcqlqnreralwsglfpinpsalastildqrvkar
ilgdvisvsncpelgsdtriilqnsmrvsgsttrcysrplisivslngsgtvegqlgtdn
elimsrdllepcvanhkryflfghhyvyyedyryvreiavhdvgmistyvdlnltllkdr
efmplqvytrdelrdtglldyseiqrrnqmhslrfydidkvvq