PDB entry 6vld

View 6vld on RCSB PDB site
Description: crystal structure of human alpha 1,6-fucosyltransferase, fut8 bound to gdp and a2sgp
Deposited on 2020-01-23, released 2020-02-26
The last revision was dated 2020-09-16, with a file datestamp of 2020-09-11.
Experiment type: XRAY
Resolution: 2.28 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-(1,6)-fucosyltransferase
    Species: Homo sapiens [TaxId:9606]
    Gene: FUT8
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Alpha-(1,6)-fucosyltransferase
    Species: Homo sapiens [TaxId:9606]
    Gene: FUT8
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Alpha-(1,6)-fucosyltransferase
    Species: Homo sapiens [TaxId:9606]
    Gene: FUT8
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Alpha-(1,6)-fucosyltransferase
    Species: Homo sapiens [TaxId:9606]
    Gene: FUT8
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ASN, BMA, GDP, MAN, NAG, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vldA (A:)
rnglgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersim
tdlyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcql
hhvvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdk
nvqvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlek
eieeatkklgfkhpvigvhvrrtdkvgteaafhpieeymvhveehfqllarrmqvdkkrv
ylatddpsllkeaktkypnyefisdnsiswsaglhnrytenslrgvildihflsqadflv
ctfssqvcrvayeimqtlhpdasanfhslddiyyfggqnahnqiaiyahqprtadeipme
pgdiigvagnhwdgyskgvnrklgrtglypsykvrekietvkyptypeaekhhhhhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6vldA (A:)
glgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersimtd
lyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcqlhh
vvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdknv
qvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlekei
eeatkklgfkhpvigvhvrrtdkvgteaafhpieeymvhveehfqllarrmqvdkkrvyl
atddpsllkeaktkypnyefisdnsiswsaglhnrytenslrgvildihflsqadflvct
fssqvcrvayeimqtlhpdasanfhslddiyyfggqnahnqiaiyahqprtadeipmepg
diigvagnhwdgyskgvnrklgrtglypsykvrekietvkyptypea

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vldB (B:)
rnglgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersim
tdlyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcql
hhvvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdk
nvqvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlek
eieeatkklgfkhpvigvhvrrtdkvgteaafhpieeymvhveehfqllarrmqvdkkrv
ylatddpsllkeaktkypnyefisdnsiswsaglhnrytenslrgvildihflsqadflv
ctfssqvcrvayeimqtlhpdasanfhslddiyyfggqnahnqiaiyahqprtadeipme
pgdiigvagnhwdgyskgvnrklgrtglypsykvrekietvkyptypeaekhhhhhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6vldB (B:)
glgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersimtd
lyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcqlhh
vvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdknv
qvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlekei
eeatkklgfkhpvigvhvrrtdkvgteaafhpieeymvhveehfqllarrmqvdkkrvyl
atddpsllkeaktkypnyefisdnsiswsaglhnrytenslrgvildihflsqadflvct
fssqvcrvayeimqtlhpdasanfhslddiyyfggqnahnqiaiyahqprtadeipmepg
diigvagnhwdgyskgvnrklgrtglypsykvrekietvkyptypeaek

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6vldG (G:)
rnglgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersim
tdlyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcql
hhvvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdk
nvqvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlek
eieeatkklgfkhpvigvhvrrtdkvgteaafhpieeymvhveehfqllarrmqvdkkrv
ylatddpsllkeaktkypnyefisdnsiswsaglhnrytenslrgvildihflsqadflv
ctfssqvcrvayeimqtlhpdasanfhslddiyyfggqnahnqiaiyahqprtadeipme
pgdiigvagnhwdgyskgvnrklgrtglypsykvrekietvkyptypeaekhhhhhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6vldG (G:)
glgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersimtd
lyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcqlhh
vvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdknv
qvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlekei
eeatkklgfkhpvigvhvrrtdkvaafhpieeymvhveehfqllarrmqvdkkrvylatd
dpsllkeaktkypnyefisdnsiswsaglhnrytenslrgvildihflsqadflvctfss
qvcrvayeimqtlhpdasanfhslddiyyfggqnahnqiaiyahqprtadeipmepgdii
gvagnhwdgyskgvnrklgrtglypsykvrekietvkyptypeae

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6vldH (H:)
rnglgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersim
tdlyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcql
hhvvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdk
nvqvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlek
eieeatkklgfkhpvigvhvrrtdkvgteaafhpieeymvhveehfqllarrmqvdkkrv
ylatddpsllkeaktkypnyefisdnsiswsaglhnrytenslrgvildihflsqadflv
ctfssqvcrvayeimqtlhpdasanfhslddiyyfggqnahnqiaiyahqprtadeipme
pgdiigvagnhwdgyskgvnrklgrtglypsykvrekietvkyptypeaekhhhhhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >6vldH (H:)
glgkdheilrrriengakelwfflqselkklknlegnelqrhadeflldlghhersimtd
lyylsqtdgagdwrekeakdltelvqrritylqnpkdcskakklvcninkgcgygcqlhh
vvycfmiaygtqrtlilesqnwryatggwetvfrpvsetctdrsgistghwsgevkdknv
qvvelpivdslhprppylplavpedladrlvrvhgdpavwwvsqfvkylirpqpwlekei
eeatkklgfkhpvigvhvrrtaafhpieeymvhveehfqllarrmqvdkkrvylatddps
llkeaktkypnyefisdnsiswsslrgvildihflsqadflvctfssqvcrvayeimqtl
hpdasanfhslddiyyfggqnahnqiaiyahqprtadeipmepgdiigvagnhwdgyskg
vnrklgrtglypsykvrekietvkyptypeaek