PDB entry 6vkx

View 6vkx on RCSB PDB site
Description: Crystal structure of the carbohydrate-binding domain VP8* of human P[8] rotavirus strain BM13851
Class: viral protein
Keywords: Rotavirus, host receptor interaction, VIRAL PROTEIN
Deposited on 2020-01-22, released 2021-01-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 1.71 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer capsid protein VP4
    Species: Human rotavirus A [TaxId:10941]
    Gene: VP8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6vkxa_
  • Chain 'B':
    Compound: Outer capsid protein VP4
    Species: Human rotavirus A [TaxId:10941]
    Gene: VP8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6vkxb_
  • Chain 'C':
    Compound: Outer capsid protein VP4
    Species: Human rotavirus A [TaxId:10941]
    Gene: VP8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6vkxc_
  • Heterogens: PG4, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6vkxA (A:)
ildgpyqpttftpptdywilinsntngvvyestnnsdfwtaviavephvnpvdrqynvfg
enkqfnvrndsdkwkflemfrgssqndfynrrtltsdtrlvgilkyggriwtfhgetpra
ttdssntanlngisitihsefyiiprsqeskcneyinngl

    Sequence, based on observed residues (ATOM records): (download) 
    >6vkxA (A:)
dgpyqpttftpptdywilinsntngvvyestnnsdfwtaviavephvnpvdrqynvfgen
kqfnvrndsdkwkflemfrgssqndfynrrtltsdtrlvgilkyggriwtfhgetpratt
dssntanlngisitihsefyiiprsqeskcneyinng

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vkxB (B:)
ildgpyqpttftpptdywilinsntngvvyestnnsdfwtaviavephvnpvdrqynvfg
enkqfnvrndsdkwkflemfrgssqndfynrrtltsdtrlvgilkyggriwtfhgetpra
ttdssntanlngisitihsefyiiprsqeskcneyinngl

    Sequence, based on observed residues (ATOM records): (download) 
    >6vkxB (B:)
dgpyqpttftpptdywilinsntngvvyestnnsdfwtaviavephvnpvdrqynvfgen
kqfnvrndsdkwkflemfrgssqndfynrrtltsdtrlvgilkyggriwtfhgetpratt
dssntanlngisitihsefyiipeskcneyinngl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6vkxC (C:)
ildgpyqpttftpptdywilinsntngvvyestnnsdfwtaviavephvnpvdrqynvfg
enkqfnvrndsdkwkflemfrgssqndfynrrtltsdtrlvgilkyggriwtfhgetpra
ttdssntanlngisitihsefyiiprsqeskcneyinngl

    Sequence, based on observed residues (ATOM records): (download) 
    >6vkxC (C:)
dgpyqpttftpptdywilinsntngvvyestnnsdfwtaviavephvnpvdrqynvfgen
kqfnvrndsdkwkflemfrgssqndfynrrtltsdtrlvgilkyggriwtfhgetpratt
dssntanlngisitihsefyiiprsqeskcneyinng