PDB entry 6vi1

View 6vi1 on RCSB PDB site
Description: structure of fab4 bound to p22 terl(1-33)
Deposited on 2020-01-11, released 2020-09-02
The last revision was dated 2020-09-09, with a file datestamp of 2020-09-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Synthetic Fab4 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1 (Start-214)
  • Chain 'B':
    Compound: Synthetic Fab4 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1
  • Chain 'C':
    Compound: Synthetic Fab4 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1 (Start-214)
  • Chain 'D':
    Compound: Synthetic Fab4 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1 (Start-214)
  • Chain 'E':
    Compound: Synthetic Fab4 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1
  • Chain 'F':
    Compound: Synthetic Fab4 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1
  • Chain 'G':
    Compound: Synthetic Fab4 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1 (Start-214)
  • Chain 'H':
    Compound: Synthetic Fab4 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1
  • Chain 'I':
    Compound: Synthetic Fab4 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1 (Start-214)
  • Chain 'J':
    Compound: Synthetic Fab4 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1
  • Chain 'K':
    Compound: Synthetic Fab4 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1 (Start-214)
  • Chain 'L':
    Compound: Synthetic Fab4 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VI1
  • Chain 'M':
    Compound: Terminase, large subunit
    Species: Salmonella phage P22, synthetic [TaxId:10754]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Terminase, large subunit
    Species: Salmonella phage P22, synthetic [TaxId:10754]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Terminase, large subunit
    Species: Salmonella phage P22, synthetic [TaxId:10754]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Terminase, large subunit
    Species: Salmonella phage P22, synthetic [TaxId:10754]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Terminase, large subunit
    Species: Salmonella phage P22, synthetic [TaxId:10754]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: Terminase, large subunit
    Species: Salmonella phage P22, synthetic [TaxId:10754]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vi1A (A:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfi
fppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrg

    Sequence, based on observed residues (ATOM records):
    >6vi1A (A:)
diqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvps
rfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfif
ppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vi1B (B:)
eceisevqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispys
gstsyadsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfs
amdywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsga
ltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
tht

    Sequence, based on observed residues (ATOM records):
    >6vi1B (B:)
evqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispysgstsy
adsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfsamdyw
gqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vi1C (C:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfi
fppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrg

    Sequence, based on observed residues (ATOM records):
    >6vi1C (C:)
diqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvps
rfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfif
ppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vi1D (D:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfi
fppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrg

    Sequence, based on observed residues (ATOM records):
    >6vi1D (D:)
diqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvps
rfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfif
ppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vi1E (E:)
eceisevqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispys
gstsyadsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfs
amdywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsga
ltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
tht

    Sequence, based on observed residues (ATOM records):
    >6vi1E (E:)
evqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispysgstsy
adsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfsamdyw
gqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vi1F (F:)
eceisevqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispys
gstsyadsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfs
amdywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsga
ltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
tht

    Sequence, based on observed residues (ATOM records):
    >6vi1F (F:)
evqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispysgstsy
adsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfsamdyw
gqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6vi1G (G:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfi
fppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrg

    Sequence, based on observed residues (ATOM records):
    >6vi1G (G:)
diqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvps
rfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfif
ppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6vi1H (H:)
eceisevqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispys
gstsyadsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfs
amdywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsga
ltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
tht

    Sequence, based on observed residues (ATOM records):
    >6vi1H (H:)
evqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispysgstsy
adsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfsamdyw
gqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6vi1I (I:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfi
fppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrg

    Sequence, based on observed residues (ATOM records):
    >6vi1I (I:)
diqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvps
rfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfif
ppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6vi1J (J:)
eceisevqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispys
gstsyadsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfs
amdywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsga
ltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
tht

    Sequence, based on observed residues (ATOM records):
    >6vi1J (J:)
evqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispysgstsy
adsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfsamdyw
gqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6vi1K (K:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfi
fppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrg

    Sequence, based on observed residues (ATOM records):
    >6vi1K (K:)
diqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvps
rfsgsrsgtdftltisslqpedfatyycqqsvsymgpltfgqgtkveikrtvaapsvfif
ppsdsqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6vi1L (L:)
eceisevqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispys
gstsyadsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfs
amdywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsga
ltsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
tht

    Sequence, based on observed residues (ATOM records):
    >6vi1L (L:)
evqlvesggglvqpggslrlscaasgfnfyssyihwvrqapgkglewvasispysgstsy
adsvkgrftisadtskntaylqmnslraedtavyycaryswpwvsykpyyglhfsamdyw
gqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6vi1M (M:)
meldaildnlsdeeqiellelleeeenyrnthl

    Sequence, based on observed residues (ATOM records):
    >6vi1M (M:)
meldaildnlsdeeqiellelle

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6vi1N (N:)
meldaildnlsdeeqiellelleeeenyrnthl

    Sequence, based on observed residues (ATOM records):
    >6vi1N (N:)
meldaildnlsdeeqiellelle

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6vi1O (O:)
meldaildnlsdeeqiellelleeeenyrnthl

    Sequence, based on observed residues (ATOM records):
    >6vi1O (O:)
meldaildnlsdeeqiellelle

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6vi1P (P:)
meldaildnlsdeeqiellelleeeenyrnthl

    Sequence, based on observed residues (ATOM records):
    >6vi1P (P:)
meldaildnlsdeeqiellelle

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6vi1Q (Q:)
meldaildnlsdeeqiellelleeeenyrnthl

    Sequence, based on observed residues (ATOM records):
    >6vi1Q (Q:)
meldaildnlsdeeqiellelle

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6vi1R (R:)
meldaildnlsdeeqiellelleeeenyrnthl

    Sequence, based on observed residues (ATOM records):
    >6vi1R (R:)
meldaildnlsdeeqiellelle