PDB entry 6vgq

View 6vgq on RCSB PDB site
Description: clpp1p2 complex from m. tuberculosis with glf-cmk bound to clpp1
Deposited on 2020-01-08, released 2020-03-18
The last revision was dated 2020-04-01, with a file datestamp of 2020-03-27.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP2, clpP, ERS007703_00186, ERS023446_00571, EZX46_04555, FDK60_08755, FDK62_16525, SAMEA2682864_03098, SAMEA2683035_00557
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP2, clpP, ERS007703_00186, ERS023446_00571, EZX46_04555, FDK60_08755, FDK62_16525, SAMEA2682864_03098, SAMEA2683035_00557
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP2, clpP, ERS007703_00186, ERS023446_00571, EZX46_04555, FDK60_08755, FDK62_16525, SAMEA2682864_03098, SAMEA2683035_00557
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP2, clpP, ERS007703_00186, ERS023446_00571, EZX46_04555, FDK60_08755, FDK62_16525, SAMEA2682864_03098, SAMEA2683035_00557
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP2, clpP, ERS007703_00186, ERS023446_00571, EZX46_04555, FDK60_08755, FDK62_16525, SAMEA2682864_03098, SAMEA2683035_00557
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP2, clpP, ERS007703_00186, ERS023446_00571, EZX46_04555, FDK60_08755, FDK62_16525, SAMEA2682864_03098, SAMEA2683035_00557
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP2, clpP, ERS007703_00186, ERS023446_00571, EZX46_04555, FDK60_08755, FDK62_16525, SAMEA2682864_03098, SAMEA2683035_00557
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ATP-dependent clp protease proteolytic subunit 1
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP1, clpP, Rv2461c, MTV008.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: ATP-dependent clp protease proteolytic subunit 1
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP1, clpP, Rv2461c, MTV008.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: ATP-dependent clp protease proteolytic subunit 1
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP1, clpP, Rv2461c, MTV008.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: ATP-dependent clp protease proteolytic subunit 1
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP1, clpP, Rv2461c, MTV008.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: ATP-dependent clp protease proteolytic subunit 1
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP1, clpP, Rv2461c, MTV008.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: ATP-dependent clp protease proteolytic subunit 1
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP1, clpP, Rv2461c, MTV008.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: ATP-dependent clp protease proteolytic subunit 1
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: clpP1, clpP, Rv2461c, MTV008.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Z-Gly-leu-phe-CH2Cl
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VGQ (Start-4)
  • Chain 'P':
    Compound: Z-Gly-leu-phe-CH2Cl
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VGQ (Start-4)
  • Chain 'Q':
    Compound: Z-Gly-leu-phe-CH2Cl
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VGQ (Start-4)
  • Chain 'R':
    Compound: Z-Gly-leu-phe-CH2Cl
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VGQ (Start-4)
  • Chain 'S':
    Compound: Z-Gly-leu-phe-CH2Cl
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VGQ (Start-4)
  • Chain 'T':
    Compound: Z-Gly-leu-phe-CH2Cl
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VGQ (Start-4)
  • Chain 'U':
    Compound: Z-Gly-leu-phe-CH2Cl
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VGQ (Start-4)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vgqA (A:)
ilpsfiehssfgvkesnpynklfeeriiflgvqvddasandimaqllvlesldpdrditm
yinspgggftslmaiydtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvli
hqpslsgviqgqfsdleiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeea
kdygiidtvleyrklsaqta

    Sequence, based on observed residues (ATOM records):
    >6vgqA (A:)
npynklfeeriiflgvqvddasandimaqllvlesldpdrditmyinspgggftslmaiy
dtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvlihqpslsgviqgqfsdl
eiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeeakdygiidtvleyrkls

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vgqB (B:)
ilpsfiehssfgvkesnpynklfeeriiflgvqvddasandimaqllvlesldpdrditm
yinspgggftslmaiydtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvli
hqpslsgviqgqfsdleiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeea
kdygiidtvleyrklsaqta

    Sequence, based on observed residues (ATOM records):
    >6vgqB (B:)
npynklfeeriiflgvqvddasandimaqllvlesldpdrditmyinspgggftslmaiy
dtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvlihqpslsgviqgqfsdl
eiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeeakdygiidtvleyrkls

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vgqC (C:)
ilpsfiehssfgvkesnpynklfeeriiflgvqvddasandimaqllvlesldpdrditm
yinspgggftslmaiydtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvli
hqpslsgviqgqfsdleiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeea
kdygiidtvleyrklsaqta

    Sequence, based on observed residues (ATOM records):
    >6vgqC (C:)
npynklfeeriiflgvqvddasandimaqllvlesldpdrditmyinspgggftslmaiy
dtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvlihqpslsgviqgqfsdl
eiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeeakdygiidtvleyrkls

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vgqD (D:)
ilpsfiehssfgvkesnpynklfeeriiflgvqvddasandimaqllvlesldpdrditm
yinspgggftslmaiydtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvli
hqpslsgviqgqfsdleiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeea
kdygiidtvleyrklsaqta

    Sequence, based on observed residues (ATOM records):
    >6vgqD (D:)
npynklfeeriiflgvqvddasandimaqllvlesldpdrditmyinspgggftslmaiy
dtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvlihqpslsgviqgqfsdl
eiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeeakdygiidtvleyrkls

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vgqE (E:)
ilpsfiehssfgvkesnpynklfeeriiflgvqvddasandimaqllvlesldpdrditm
yinspgggftslmaiydtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvli
hqpslsgviqgqfsdleiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeea
kdygiidtvleyrklsaqta

    Sequence, based on observed residues (ATOM records):
    >6vgqE (E:)
npynklfeeriiflgvqvddasandimaqllvlesldpdrditmyinspgggftslmaiy
dtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvlihqpslsgviqgqfsdl
eiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeeakdygiidtvleyrkls

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vgqF (F:)
ilpsfiehssfgvkesnpynklfeeriiflgvqvddasandimaqllvlesldpdrditm
yinspgggftslmaiydtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvli
hqpslsgviqgqfsdleiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeea
kdygiidtvleyrklsaqta

    Sequence, based on observed residues (ATOM records):
    >6vgqF (F:)
npynklfeeriiflgvqvddasandimaqllvlesldpdrditmyinspgggftslmaiy
dtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvlihqpslsgviqgqfsdl
eiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeeakdygiidtvleyrkls

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6vgqG (G:)
ilpsfiehssfgvkesnpynklfeeriiflgvqvddasandimaqllvlesldpdrditm
yinspgggftslmaiydtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvli
hqpslsgviqgqfsdleiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeea
kdygiidtvleyrklsaqta

    Sequence, based on observed residues (ATOM records):
    >6vgqG (G:)
npynklfeeriiflgvqvddasandimaqllvlesldpdrditmyinspgggftslmaiy
dtmqyvradiqtvclgqaasaaavllaagtpgkrmalpnarvlihqpslsgviqgqfsdl
eiqaaeiermrtlmettlarhtgkdagvirkdtdrdkiltaeeakdygiidtvleyrkls

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6vgqH (H:)
mrsnsqglsltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyins
pggsisagmaiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqpl
ggvtgsaadiaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfv
dhiitrahvngeaq

    Sequence, based on observed residues (ATOM records):
    >6vgqH (H:)
sltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyinspggsisag
maiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqplggvtgsaa
diaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfvdhiitr

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6vgqI (I:)
mrsnsqglsltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyins
pggsisagmaiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqpl
ggvtgsaadiaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfv
dhiitrahvngeaq

    Sequence, based on observed residues (ATOM records):
    >6vgqI (I:)
sltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyinspggsisag
maiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqplggvtgsaa
diaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfvdhiitr

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6vgqJ (J:)
mrsnsqglsltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyins
pggsisagmaiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqpl
ggvtgsaadiaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfv
dhiitrahvngeaq

    Sequence, based on observed residues (ATOM records):
    >6vgqJ (J:)
sltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyinspggsisag
maiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqplggvtgsaa
diaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfvdhiitr

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6vgqK (K:)
mrsnsqglsltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyins
pggsisagmaiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqpl
ggvtgsaadiaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfv
dhiitrahvngeaq

    Sequence, based on observed residues (ATOM records):
    >6vgqK (K:)
sltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyinspggsisag
maiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqplggvtgsaa
diaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfvdhiitr

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6vgqL (L:)
mrsnsqglsltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyins
pggsisagmaiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqpl
ggvtgsaadiaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfv
dhiitrahvngeaq

    Sequence, based on observed residues (ATOM records):
    >6vgqL (L:)
sltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyinspggsisag
maiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqplggvtgsaa
diaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfvdhiitr

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6vgqM (M:)
mrsnsqglsltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyins
pggsisagmaiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqpl
ggvtgsaadiaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfv
dhiitrahvngeaq

    Sequence, based on observed residues (ATOM records):
    >6vgqM (M:)
sltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyinspggsisag
maiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqplggvtgsaa
diaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfvdhiitr

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6vgqN (N:)
mrsnsqglsltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyins
pggsisagmaiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqpl
ggvtgsaadiaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfv
dhiitrahvngeaq

    Sequence, based on observed residues (ATOM records):
    >6vgqN (N:)
sltdsvyerllseriiflgsevndeianrlcaqilllaaedaskdislyinspggsisag
maiydtmvlapcdiatyamgmaasmgefllaagtkgkryalpharilmhqplggvtgsaa
diaiqaeqfavikkemfrlnaeftgqpierieadsdrdrwftaaealeygfvdhiitr

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6vgqO (O:)
xglfx

    Sequence, based on observed residues (ATOM records):
    >6vgqO (O:)
glfx

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6vgqP (P:)
xglfx

    Sequence, based on observed residues (ATOM records):
    >6vgqP (P:)
glfx

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6vgqQ (Q:)
xglfx

    Sequence, based on observed residues (ATOM records):
    >6vgqQ (Q:)
glfx

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6vgqR (R:)
xglfx

    Sequence, based on observed residues (ATOM records):
    >6vgqR (R:)
glfx

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6vgqS (S:)
xglfx

    Sequence, based on observed residues (ATOM records):
    >6vgqS (S:)
glfx

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6vgqT (T:)
xglfx

    Sequence, based on observed residues (ATOM records):
    >6vgqT (T:)
glfx

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6vgqU (U:)
xglfx

    Sequence, based on observed residues (ATOM records):
    >6vgqU (U:)
glfx