PDB entry 6vgj

View 6vgj on RCSB PDB site
Description: N-terminal variant of CXCL13
Class: cytokine
Keywords: Chemokine, Agonist, CYTOKINE
Deposited on 2020-01-08, released 2020-10-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: XRAY
Resolution: 2.52 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C-X-C motif chemokine 13
    Species: Homo sapiens [TaxId:9606]
    Gene: CXCL13, BCA1, BLC, SCYB13
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43927 (0-End)
      • engineered mutation (0)
    Domains in SCOPe 2.08: d6vgja_
  • Chain 'B':
    Compound: C-X-C motif chemokine 13
    Species: Homo sapiens [TaxId:9606]
    Gene: CXCL13, BCA1, BLC, SCYB13
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43927 (0-End)
      • engineered mutation (0)
    Domains in SCOPe 2.08: d6vgjb_
  • Chain 'C':
    Compound: C-X-C motif chemokine 13
    Species: Homo sapiens [TaxId:9606]
    Gene: CXCL13, BCA1, BLC, SCYB13
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43927 (0-End)
      • engineered mutation (0)
    Domains in SCOPe 2.08: d6vgjc_
  • Chain 'D':
    Compound: C-X-C motif chemokine 13
    Species: Homo sapiens [TaxId:9606]
    Gene: CXCL13, BCA1, BLC, SCYB13
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43927 (0-End)
      • engineered mutation (0)
    Domains in SCOPe 2.08: d6vgjd_
  • Chain 'E':
    Compound: C-X-C motif chemokine 13
    Species: Homo sapiens [TaxId:9606]
    Gene: CXCL13, BCA1, BLC, SCYB13
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vgje_
  • Chain 'F':
    Compound: C-X-C motif chemokine 13
    Species: Homo sapiens [TaxId:9606]
    Gene: CXCL13, BCA1, BLC, SCYB13
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43927 (0-End)
      • engineered mutation (0)
    Domains in SCOPe 2.08: d6vgjf_
  • Chain 'G':
    Compound: C-X-C motif chemokine 13
    Species: Homo sapiens [TaxId:9606]
    Gene: CXCL13, BCA1, BLC, SCYB13
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43927 (0-End)
      • engineered mutation (0)
    Domains in SCOPe 2.08: d6vgjg_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6vgjA (A:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrssstlpvpvfkrkip

    Sequence, based on observed residues (ATOM records): (download) 
    >6vgjA (A:)
mevyytslrcrcvqessvfiprrfidriqilpgcprkeiivwkknksivcvdpqaewiqr
mmevlrkrssstlpvpvfk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vgjB (B:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrssstlpvpvfkrkip

    Sequence, based on observed residues (ATOM records): (download) 
    >6vgjB (B:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6vgjC (C:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrssstlpvpvfkrkip

    Sequence, based on observed residues (ATOM records): (download) 
    >6vgjC (C:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6vgjD (D:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrssstlpvpvfkrkip

    Sequence, based on observed residues (ATOM records): (download) 
    >6vgjD (D:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6vgjE (E:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrssstlpvpvfkrkip

    Sequence, based on observed residues (ATOM records): (download) 
    >6vgjE (E:)
evyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaewi
qrmmevlrkrssstlpvp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6vgjF (F:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrssstlpvpvfkrkip

    Sequence, based on observed residues (ATOM records): (download) 
    >6vgjF (F:)
mevyytslrcrcvqessvfiprrfidriqilprgcprkeiivwkknksivcvdpqaewiq
rmmevlrkrssstpvpv

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6vgjG (G:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrssstlpvpvfkrkip

    Sequence, based on observed residues (ATOM records): (download) 
    >6vgjG (G:)
mevyytslrcrcvqessvfiprrfidriqilprgngcprkeiivwkknksivcvdpqaew
iqrmmevlrkrss