PDB entry 6vfz

View 6vfz on RCSB PDB site
Description: Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with NADPH and AG-881 (Vorasidenib) Inhibitor.
Class: OXIDOREDUCTASE/OXIDOREDUCTASE inhibitor
Keywords: IDH, ICD-M, IDP, NADP(+)-SPECIFIC ICDH, OXALOSUCCINATE DECARBOXYLASE, OXIDOREDUCTASE-OXIDOREDUCTASE inhibitor complex
Deposited on 2020-01-07, released 2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-03-04, with a file datestamp of 2020-02-28.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Isocitrate dehydrogenase [NADP], mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: IDH2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P48735 (Start-451)
      • engineered mutation (139)
      • expression tag (452-455)
    Domains in SCOPe 2.08: d6vfza1, d6vfza2
  • Chain 'B':
    Compound: Isocitrate dehydrogenase [NADP], mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: IDH2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P48735
      • engineered mutation (139)
    Domains in SCOPe 2.08: d6vfzb_
  • Heterogens: 9UO, NDP, CA, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6vfzA (A:)
    magylrvvrslcrasgsrpawapaaltaptsqeqprrhyadkrikvakpvvemdgdemtr
    iiwqfikeklilphvdiqlkyfdlglpnrdqtddqvtidsalatqkysvavkcatitpde
    arveefklkkmwkspngtiqnilggtvfrepiickniprlvpgwtkpitigrhahgdqyk
    atdfvadragtfkmvftpkdgsgvkewevynfpaggvgmgmyntdesisgfahscfqyai
    qkkwplymstkntilkaydgrfkdifqeifdkhyktdfdknkiwyehrliddmvaqvlks
    sggfvwacknydgdvqsdilaqgfgslglmtsvlvcpdgktieaeaahgtvtrhyrehqk
    grptstnpiasifawtrglehrgkldgnqdlirfaqmlekvcvetvesgamtkdlagcih
    glsnvklnehflnttdfldtiksnldralgrqhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6vfzA (A:)
    dkrikvakpvvemdgdemtriiwqfikeklilphvdiqlkyfdlglpnrdqtddqvtids
    alatqkysvavkcatitpdearveefklkkmwkspngtiqnilggtvfrepiickniprl
    vpgwtkpitigrhahgdqykatdfvadragtfkmvftpkdgsgvkewevynfpaggvgmg
    myntdesisgfahscfqyaiqkkwplymstkntilkaydgrfkdifqeifdkhyktdfdk
    nkiwyehrliddmvaqvlkssggfvwacknydgdvqsdilaqgfgslglmtsvlvcpdgk
    tieaeaahgtvtrhyrehqkgrptstnpiasifawtrglehrgkldgnqdlirfaqmlek
    vcvetvesgamtkdlagcihglsnvklnehflnttdfldtiksnldralgrqhhhh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6vfzB (B:)
    magylrvvrslcrasgsrpawapaaltaptsqeqprrhyadkrikvakpvvemdgdemtr
    iiwqfikeklilphvdiqlkyfdlglpnrdqtddqvtidsalatqkysvavkcatitpde
    arveefklkkmwkspngtiqnilggtvfrepiickniprlvpgwtkpitigrhahgdqyk
    atdfvadragtfkmvftpkdgsgvkewevynfpaggvgmgmyntdesisgfahscfqyai
    qkkwplymstkntilkaydgrfkdifqeifdkhyktdfdknkiwyehrliddmvaqvlks
    sggfvwacknydgdvqsdilaqgfgslglmtsvlvcpdgktieaeaahgtvtrhyrehqk
    grptstnpiasifawtrglehrgkldgnqdlirfaqmlekvcvetvesgamtkdlagcih
    glsnvklnehflnttdfldtiksnldralgrqhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6vfzB (B:)
    rikvakpvvemdgdemtriiwqfikeklilphvdiqlkyfdlglpnrdqtddqvtidsal
    atqkysvavkcatitpdearveefklkkmwkspngtiqnilggtvfrepiickniprlvp
    gwtkpitigrhahgdqykatdfvadragtfkmvftpkdgsgvkewevynfpaggvgmgmy
    ntdesisgfahscfqyaiqkkwplymstkntilkaydgrfkdifqeifdkhyktdfdknk
    iwyehrliddmvaqvlkssggfvwacknydgdvqsdilaqgfgslglmtsvlvcpdgkti
    eaeaahgtvtrhyrehqkgrptstnpiasifawtrglehrgkldgnqdlirfaqmlekvc
    vetvesgamtkdlagcihglsnvklnehflnttdfldtiksnldra