PDB entry 6vdj

View 6vdj on RCSB PDB site
Description: Crystal structure of ancestral apicomplexan lactate dehydrogenase with sulfate and NADH4.
Class: oxidoreductase
Keywords: Nucleotide Binding, Oxidoreductase, Rossman Fold, Ancestral Reconstruction
Deposited on 2019-12-27, released 2020-01-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lactate dehydrogenase
    Species: Apicomplexa sp. [TaxId:2041159]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VDJ
    Domains in SCOPe 2.07: d6vdja1, d6vdja2
  • Chain 'B':
    Compound: lactate dehydrogenase
    Species: Apicomplexa sp. [TaxId:2041159]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VDJ
    Domains in SCOPe 2.07: d6vdjb1, d6vdjb2
  • Heterogens: SO4, TXD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6vdjA (A:)
mavfeqnkrpkisligsgmiggtmaylcalkelgdvvlfdvvknmpqgkaldlshstsva
dtnvkvtgtnsyedikgsdvviitagltkvpgksdkewsrddllpinakimkevgenikk
ycpnafvicitnpldvmvkvlqeasglphnkvcgmagvldssrfryfiaeklnvsprdvq
amvigahgdnmvplpryvtvngiplqefikkgwitqeeideivertrnaggeivnllgtg
sayfapaasaiamaeaylkdqkrvlpcscylegqygvkdlyvgvpvviggngvekviele
ltpeekemfdksieevrelvkalealdapa

    Sequence, based on observed residues (ATOM records): (download) 
    >6vdjA (A:)
krpkisligsgmiggtmaylcalkelgdvvlfdvvknmpqgkaldlshstsvadtnvkvt
gtnsyedikgsdvviitagltddllpinakimkevgenikkycpnafvicitnpldvmvk
vlqeasglphnkvcgmagvldssrfryfiaeklnvsprdvqamvigahgdnmvplpryvt
vngiplqefikkgwitqeeideivertrnaggeivnllgtgsayfapaasaiamaeaylk
dqkrvlpcscylegqygvkdlyvgvpvviggngvekvieleltpeekemfdksieevrel
vkaleald

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vdjB (B:)
mavfeqnkrpkisligsgmiggtmaylcalkelgdvvlfdvvknmpqgkaldlshstsva
dtnvkvtgtnsyedikgsdvviitagltkvpgksdkewsrddllpinakimkevgenikk
ycpnafvicitnpldvmvkvlqeasglphnkvcgmagvldssrfryfiaeklnvsprdvq
amvigahgdnmvplpryvtvngiplqefikkgwitqeeideivertrnaggeivnllgtg
sayfapaasaiamaeaylkdqkrvlpcscylegqygvkdlyvgvpvviggngvekviele
ltpeekemfdksieevrelvkalealdapa

    Sequence, based on observed residues (ATOM records): (download) 
    >6vdjB (B:)
krpkisligsgmiggtmaylcalkelgdvvlfdvvknmpqgkaldlshstsvadtnvkvt
gtnsyedikgsdvviitagltkvpgdkewsrddllpinakimkevgenikkycpnafvic
itnpldvmvkvlqeasglphnkvcgmagvldssrfryfiaeklnvsprdvqamvigahgd
nmvplpryvtvngiplqefikkgwitqeeideivertrnaggeivnllgtgsayfapaas
aiamaeaylkdqkrvlpcscylegqygvkdlyvgvpvviggngvekvieleltpeekemf
dksieevrelvkaleal