PDB entry 6vcl

View 6vcl on RCSB PDB site
Description: Crystal structure of E.coli RppH-DapF in complex with pppGpp, Mg2+ and F-
Class: RNA binding protein/isomerase
Keywords: RNA degradation, RNA BINDING PROTEIN, RNA BINDING PROTEIN-ISOMERASE complex
Deposited on 2019-12-21, released 2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-04-22, with a file datestamp of 2020-04-17.
Experiment type: XRAY
Resolution: 2.06 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Diaminopimelate epimerase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dapF, b3809, JW5592
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6K1 (1-274)
      • expression tag (0)
      • engineered mutation (36)
      • engineered mutation (268)
    Domains in SCOPe 2.08: d6vcla1, d6vcla2, d6vcla3
  • Chain 'B':
    Compound: RNA pyrophosphohydrolase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rppH, nudH, ygdP, b2830, JW2798
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A776 (1-End)
      • expression tag (0)
      • engineered mutation (159)
  • Heterogens: 0O2, F, MG, CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6vclA (A:)
smqfskmhglgndfmvvdavtqnvffspelirrladahlgvgfdqllvveppydpeldfh
yrifnadgsevaqcgngarcfarfvrlkgltnkrdirvstangrmvltvtdddlvrvnmg
epnfepsavpfrankaektyimraaeqtilcgvvsmgnphcviqvddvdtaavetlgpvl
esherfperanigfmqvvkrehirlrvyergagetqacgsgacaavavgiqqgllaeevr
velpggrldiawkgpghplymtgpavhvadgfihl

  • Chain 'B':
    No sequence available.