PDB entry 6vck

View 6vck on RCSB PDB site
Description: Crystal structure of E.coli RppH-DapF in complex with GDP, Mg2+ and F-
Class: RNA binding protein/isomerase
Keywords: RNA degradation, RNA BINDING PROTEIN, RNA BINDING PROTEIN-ISOMERASE complex
Deposited on 2019-12-21, released 2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-04-22, with a file datestamp of 2020-04-17.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Diaminopimelate epimerase
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Gene: dapF, b3809, JW5592
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A6K1 (1-274)
    • expression tag (0)
    • engineered mutation (36)
    • engineered mutation (268)
  Domains in SCOPe 2.08: d6vcka1, d6vcka2, d6vcka3
• Chain 'B':
  Compound: RNA pyrophosphohydrolase
  Species: Escherichia coli (strain K12) [TaxId:83333]
  Gene: rppH, nudH, ygdP, b2830, JW2798
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A776 (1-End)
    • expression tag (0)
    • engineered mutation (159)
• Heterogens: F, GDP, MG, CL, HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6vckA (A:)
  smqfskmhglgndfmvvdavtqnvffspelirrladahlgvgfdqllvveppydpeldfh
  yrifnadgsevaqcgngarcfarfvrlkgltnkrdirvstangrmvltvtdddlvrvnmg
  epnfepsavpfrankaektyimraaeqtilcgvvsmgnphcviqvddvdtaavetlgpvl
  esherfperanigfmqvvkrehirlrvyergagetqacgsgacaavavgiqqgllaeevr
  velpggrldiawkgpghplymtgpavhvadgfihl
  

  
  
• Chain 'B':
  No sequence available.