PDB entry 6vcg

View 6vcg on RCSB PDB site
Description: crystal structure of nitrosotalea devanaterra carotenoid cleavage dioxygenase, cobalt form
Deposited on 2019-12-20, released 2020-07-08
The last revision was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CO, NA, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vcgA (A:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcgA (A:)
nkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlhk
fsfkegkvsyankfleskayqsardtdkisyrefatdpckftdnanvnvtkiaerfvamt
etplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyk
iadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswk
pengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyld
ilrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygist
ysasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatnak
sfllildattfeevaraevphhipfgfhgnyfe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vcgB (B:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcgB (B:)
nkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlhk
fsfkegkvsyankfleskayqsardtdkisyrefatdpckftdnanvnvtkiaerfvamt
etplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyk
iadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswk
pengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyld
ilrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygist
ysasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatnak
sfllildattfeevaraevphhipfgfhgnyfe

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vcgC (C:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcgC (C:)
nkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlhk
fsfkegkvsyankfleskayqsardtdkisyrefatdpckftdnanvnvtkiaerfvamt
etplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyk
iadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswk
pengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyld
ilrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygist
ysasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatnak
sfllildattfeevaraevphhipfgfhgnyfe

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vcgD (D:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcgD (D:)
tnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlh
kfsfkegkvsyankfleskayqsardtdkisyrefatdpcftdnanvnvtkiaerfvamt
etplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyk
iadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswk
pengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyld
ilrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygist
ysasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatnak
sfllildattfeevaraevphhipfgfhgnyfe

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vcgE (E:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcgE (E:)
kfqlgfstlseeldleslqvkgtiirngpakfevgkekfqhwfdglamlhkfskegkvsy
ankfleskayqsardtdkisyrefatdpkrvssmfstkftdnanvnvtkiaerfvamtet
plpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvykia
dktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswkpe
ngtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyldil
rgqktdtipripveyemlsseavelpriykqyntkdyrfvygiqlvkisskiwsekdcyp
gepvfvgapdatkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgn
yfe

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vcgF (F:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcgF (F:)
qlgfstlseeldleslkgtiirngpakfevgkekfqhwfdglamlhkfsfkegkvsyank
fleskayqsardtdkisyrefatdpcrsifkrvssmfstkftdnanvnvtkiaerfvamt
etplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyk
iadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswk
pengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyld
ilptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygiqlvkisskiw
sekdcypgepvfvgapdatkedeglilsavldatnaksfllildattfeevaraevphhi
pfgfhgnyfe