PDB entry 6vcf

View 6vcf on RCSB PDB site
Description: crystal structure of nitrosotalea devanaterra carotenoid cleavage dioxygenase, iron form
Deposited on 2019-12-20, released 2020-07-08
The last revision was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: carotenoid cleavage dioxygenase
    Species: Candidatus Nitrosotalea devanaterra [TaxId:1078905]
    Gene: NDEV_1113
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE2, CL, NA, BCT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vcfA (A:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcfA (A:)
nkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlhk
fsfkegkvsyankfleskayqsardtdkisyrefatdpckftdnanvnvtkiaerfvamt
etplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyk
iadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswk
pengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyld
ilrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygist
ysasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatnak
sfllildattfeevaraevphhipfgfhgnyfe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vcfB (B:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcfB (B:)
nkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlhk
fsfkegkvsyankfleskayqsardtdkisyrefatdpcrskftdnanvnvtkiaerfva
mtetplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynv
ykiadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfs
wkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnaly
ldilrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygi
stysasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatn
aksfllildattfeevaraevphhipfgfhgnyfe

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vcfC (C:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcfC (C:)
nkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlhk
fsfkegkvsyankfleskayqsardtdkisyrefatdpckftdnanvnvtkiaerfvamt
etplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyk
iadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswk
pengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyld
ilrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygist
ysasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatnak
sfllildattfeevaraevphhipfgfhgnyfe

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vcfD (D:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcfD (D:)
nkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdglamlhk
fsfkegkvsyankfleskayqsardtdkisyrefatdpcftdnanvnvtkiaerfvamte
tplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvyki
adktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswkp
engtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyldi
lrgqktdtiptshirryriplsggqveyemlsseavelprinykqyntkdyrfvygisty
sasdfanqlvkidilrksskiwsekdcypgepvfvgapdatkedeglilsavldatnaks
fllildattfeevaraevphhipfgfhgnyfe

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vcfE (E:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcfE (E:)
nkfqlgfstlseeldleslqvkgtiirngpakfevgkekfqhwfdglamlhkfskegkvs
yankfleskayqsardtdkisyrefatdpcrsrvssmfstkftdnanvnvtkiaerfvam
tetplpvefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvy
kiadktnhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfsw
kpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyl
dilrgqktdtipriplveyemlsseavelprinykqyntkdyrfvygqlvkidilrkssk
iwsekdcypgepvfvgapdatkedeglilsavldatnaksfllildattfeevaraevph
hipfgfhgnyfe

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vcfF (F:)
maytvtnkfqlgfstlseeldleslqvkgtipkwlsgtlirngpakfevgkekfqhwfdg
lamlhkfsfkegkvsyankfleskayqsardtdkisyrefatdpcrsifkrvssmfstkf
tdnanvnvtkiaerfvamtetplpvefdintlktvgvfayddkiesglttahphydfvkn
elvnyatkisrssnynvykiadktnhrnligsipveepaymhsfamtenyvvlveypfvv
kpldlllsgkpfienfswkpengtrfiivnrqngnlvgtyksdaffafhhvnafekqeei
fvdiiayqdssivnalyldilrgqktdtiptshirryriplsggqveyemlsseavelpr
inykqyntkdyrfvygistysasdfanqlvkidilrksskiwsekdcypgepvfvgapda
tkedeglilsavldatnaksfllildattfeevaraevphhipfgfhgnyfe

    Sequence, based on observed residues (ATOM records):
    >6vcfF (F:)
qlgfstlseeldleslkgtiirngpakfevgkekfqhwfdglamlhkfsfkegkvsyank
fleskayqsardtdkisyrefatdpcrvssmfstkftdnanvnvtkiaerfvamtetplp
vefdintlktvgvfayddkiesglttahphydfvknelvnyatkisrssnynvykiadkt
nhrnligsipveepaymhsfamtenyvvlveypfvvkpldlllsgkpfienfswkpengt
rfiivnrqngnlvgtyksdaffafhhvnafekqeeifvdiiayqdssivnalyldildti
ptshirryriplsggqveyemlsseavelprinykqyntkdyrfvyginqlvkidilrks
skiwsekdcypgepvfvgapdatkedeglilsavldatnaksfllildattfeevaraev
phhipfgfhgnyfe