PDB entry 6vbu

View 6vbu on RCSB PDB site
Description: structure of the bovine bbsome complex
Deposited on 2019-12-19, released 2020-01-29
The last revision was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: Bardet-Biedl syndrome 18 protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain '1':
    Compound: BBS1 domain-containing protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: Bardet-Biedl syndrome 2 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: Bardet-Biedl syndrome 4 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain '5':
    Compound: Bardet-Biedl syndrome 5 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain '7':
    Compound: Bardet-Biedl syndrome 7 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain '8':
    Compound: Bardet-Biedl syndrome 8 protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain '9':
    Compound: Bardet-Biedl syndrome 9
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '0':
    Sequence, based on SEQRES records:
    >6vbu0 (0:)
    maetksmfrevlpkqgqlyvedittmvlckpkllplksltleklekmqqaaqdtihqqem
    tekeqkith
    

    Sequence, based on observed residues (ATOM records):
    >6vbu0 (0:)
    mfrevlpkqgqlyvedittmvlckpkllplksltleklekmqqaaqdtihqq
    

  • Chain '1':
    Sequence, based on SEQRES records:
    >6vbu1 (1:)
    maatsssdsdggkgeseanskwldslsdsmanihtfsaclaladfhgdgeyklamgdlgp
    dgrqprlkvlkghtlvsqkplpdlpaaavtflmasheprtpalaiasgpcvyvyknlkpy
    fkfslpslptnpleqdlwnqakedqidpltlkemlegirekaevplsvqslrflplelse
    meafvnqhksksirrqtvittmttlkknladedavsclvlgtenkellvldpeaftilak
    mslpsvpafleasgqfdvefrlaaacrngsiyilrrdskrpkycielgaqpvglvgvhkv
    lvvgsnqdslhgftykgkrlwtvqmpaailamnlleqhsrglqavmaalaneevriyhdk
    vllnvirtpeavtslcfgrygredntlimttlgggliikilkrtavfaegggeagpppsq
    aiklnvprktrlyvdqtlrereagtamhrtfqadlyllrlraarayvqalesslspvslt
    areplklhavvqglgptfkltlhlqntstarpilglvvcflynevlyalpraffkvpllv
    pglnypletfvkslsdkgisdiikvlvlregqstpllsahinmpmseglaad
    

    Sequence, based on observed residues (ATOM records):
    >6vbu1 (1:)
    skwldslsdsmanihtfsaclaladfhgdgeyklamgdlgpdgrqprlkvlkghtlvsqk
    plpdlpaaavtflmasheprtpalaiasgpcvyvyknlkpyfkfslpslprrqtvittmt
    tlkknladedavsclvlgtenkellvldpeaftilakmslpsvpafleasgqfdvefrla
    aacrngsiyilrrdskrpkycielgaqpvglvgvhkvlvvgsnqdslhgftykgkrlwtv
    qmpaailamnlleqhsrglqavmaalaneevriyhdkvllnvirtpeavtslcfgrygre
    dntlimttlgggliikilkrtaklnvprktrlyvdqtlrereagtamhrtfqadlyllrl
    raarayvqalesslspvsreplklhavvqglgptfkltlhlqntstarpilglvvcflyn
    evlyalpraffkvpllvpglnypletfvkslsdkgisdiikvlvlregqstpllsahinm
    pmsegl
    

  • Chain '2':
    Sequence, based on SEQRES records:
    >6vbu2 (2:)
    mlqpvftlklrhkisprmvavgrydgthpclaaatqagkvfihnphsrsqhlgaprvlqs
    plesdvsllninqtvscltagvlnpelgydallvgtqtnllaydvynnsdlfyrevadga
    saivlgtlgditsplaiiggncalqgfnhegndlfwtvtgdnvhslalcdfdgdgkkell
    vgsedfdirvfkedeivaemseteiitslcpmygsrfgyalsngtvgvydktarywriks
    knqamsihafdlnsdgvcelitgwsngkvdarsdrtgevifkdnfssaiagvvegdyrme
    gcqqliccsvdgeirgylpgtaemrgnlmdisveqdlirelsqkkqnlllelrnyeenak
    aelssplneadghrgvipantkhhtalsvslgseaqaahaelcistsndtiiravlifae
    gvfageshvvhpsvhhlsssvripitppkdipvdlhlktfvgyrsstqfhvfeltrqlpr
    fsmyaltspdpaseplsyvnfiiaeraqrvvmwlnqnfllpedtniqnapfqvcftslrn
    ggqlyikiklsgeitvntddidlagdiiqsmasffaiedlqveadfpvyfeelrkvlvkv
    deyhsvhqklsadmadnsnlirsllvqaedarlmrdmktmknrykelydlnkdllngyki
    rcnnhtellgslkavnqaiqraghlrvgkpknqvitacrdairsnninmlfrimrvgtas
    s
    

    Sequence, based on observed residues (ATOM records):
    >6vbu2 (2:)
    lqpvftlklrhkisprmvavgrydgthpclaaatqagkvfihnpdvsllninqtvsclta
    gvlnpelgydallvgtqtnllaydvynnsdlfyrevadgasaivlgtlgditsplaiigg
    ncalqgfnhegndlfwtvtgdnvhslalcdfdgdgkkellvgsedfdirvfkedeivaem
    seteiitslcpmygsrfgyalsngtvgvydktarywriksknqamsihafdlnsdgvcel
    itgwsngkvdarsdrtgevifkdnfssaiagvvegdyrmegcqqliccsvdgeirgylpi
    relsqkkqnlllelrnyeenagvipantkhhtalsvslgahaelcistsndtiiravlif
    aegvfageshvvhpsvhhlsssvripitppkdipvdlhlktfvgyrsstqfhvfeltrql
    prfsmyaltspdpaseplsyvnfiiaeraqrvvmwlnqnfllpedtniqnapfqvcftsl
    rnggqlyikiklsgeitvntddidlagdiiqsmasffaiedlqveadfpvyfeelrkvlv
    kvdeyhsvhqklsadmadnsnlirsllvqaedarlmrdmktmknrykelydlnkdllngy
    kircnnhtellgslkavnqaiqraghlrvgkpknqvitacrdairsnninmlfrimrvg
    

  • Chain '4':
    Sequence, based on SEQRES records:
    >6vbu4 (4:)
    maeeklsartqlpvsaesqkpvlkkapefpilekqnwlihlyyiqkdyeackavikeqlq
    ethglceyaiyvqalifrlegniqeslrlfqmcaflspqcadnlkqvarslfllgkhkaa
    ievyneaaklnqkdweichnlgvcyiylkqfdkaqdqlhnalhlnrhdltyimlgkifll
    kgdldkaieiykkavefspentellttlgllylqlgiyqkafehlgntltydptnykail
    aagsmmqthgdfdvaltkykvvacaviespplwnnigmcffgkkkyvaaisclkranyla
    pldwkilynlglvhltmqqyasafhflsaainfqpkmgelymllavaltnledsenakra
    yeeavrldkcnplvnlnyavllynqgekrdalaqyqemekkvnllkyssslefdpemvev
    aqklgaalqvgealvwtkpvkdpkskhqtastskaagfqqplgsnqalgqamssaatcrk
    lssgaggtsqltkppslplepeptveaqpteasaqtrek
    

    Sequence, based on observed residues (ATOM records):
    >6vbu4 (4:)
    kqnwlihlyyiqkdyeackavikeqlqethglceyaiyvqalifrlegniqeslrlfqmc
    aflspqcadnlkqvarslfllgkhkaaievyneaaklnqkdweichnlgvcyiylkqfdk
    aqdqlhnalhlnrhdltyimlgkifllkgdldkaieiykkavefspentellttlgllyl
    qlgiyqkafehlgntltydptnykailaagsmmqthgdfdvaltkykvvacaviespplw
    nnigmcffgkkkyvaaisclkranylapldwkilynlglvhltmqqyasafhflsaainf
    qpkmgelymllavaltnledsenakrayeeavrldkcnplvnlnyavllynqgekrdala
    qyqemekkvssslefdpemvevaqkl
    

  • Chain '5':
    Sequence, based on SEQRES records:
    >6vbu5 (5:)
    msvldalwedrdvrfdvssqqmktrpgevlidcldsvedtkgnngdrgrllvtnlrivwh
    slalprvnlsigyncilnittrtansklrgqtealyvltkcnstrfefiftnlvpgsprl
    ytsliavhrayetskmyrdfklrsaliqnkqlrllpqenvynkingvwnlssdqgnlgtf
    fitnvrivwhanmndsfnvsipylqirsvkirdskfglalviessqqsggyvlgfkidpv
    eklqesvkeinslhkvysanpifgvdyemeekpqplealtvkqiqddveidsddhtdafv
    ayfadgnkqqdrepvfseelglaieklkdgftlqglwevmn
    

    Sequence, based on observed residues (ATOM records):
    >6vbu5 (5:)
    alwedrdvrfdvssqqmktrpgevlidcldsvedtkgnngdrgrllvtnlrivwhslalp
    rvnlsigyncilnittrtansklrgqtealyvltkcnstrfefiftnlvpgsprlytsli
    avhrayetskmyrdfklrsaliqnkqlrllpqenvynkingvwnlssdqgnlgtffitnv
    rivwhanmndsfnvsipylqirsvkiralviessqqsggyvlgfkidpveklqesvkein
    slhkvysanpifgvdytdafvayfadgnkqqdrepvfseelglaieklkdgftlqglwev
    

  • Chain '7':
    Sequence, based on SEQRES records:
    >6vbu7 (7:)
    mdlnlnradylqvgvtsqktmkllpaskhratqkvvvgdhdgivmcfgmkkgeavtvfkt
    lpgqkiarlelggalntpqekifiaagseirgftkrgkqflsfetnltesikamhisgsd
    lflsasyiynhycdckdqhyylsgdkindviclpverllrevpvlacqdrvlrvlqgsdv
    tyeievpgpptvlalhngnggdsgedllfgtsdgklgliqittskpihkweirnekkrgg
    ilcvdsfdivgdgvkdllvgrddgmvevygfdnanepvlrfdhtlsesvtsiqggcvgkd
    gydeivvstysgwitglttepvhkesgpgeelkfnqemqnkisslrseleqlqykvlqer
    ekyqqssqsskaksavpsfsvndkftlnkddasyslilevqtaidnvliqsdvpidlldv
    dknsavvsfsscdsesndnfllatyrcqanttrlelkirsiegqygtlqayvtpriqpkt
    cqvrqyhikplslhqrthfidhdrpmntltltgqfsfselhswvvfcmpevpekppagec
    vtfyfqntfldtqlestyrkgegvfksdnistisilkdvlskeatkrkinlnisyeinev
    svkhtlklihpkleyqlllakkvqlidalkelqvhegntnflipeyrcileeadhlqeey
    kkqpahlerlygmitdlfidkfkfkgtnvktkvpllleildsydqnaliaffdaa
    

    Sequence, based on observed residues (ATOM records):
    >6vbu7 (7:)
    dlnlnradylqvgvtsqktmkllparatqkvvvgdhdgivmcfgmkkgeavtvfktlpgq
    kiarlelggalntpqekifiaagseirgftkrgkqflsfetnltesikamhisgsdlfls
    asyiynhycdckdqhyylsgdkindviclpverllrevpvlacqdrvlrvlqgsdvtyei
    evpgpptvlalhngnggdsgedllfgtsdgklgliqittskpihkweirnekkrggilcv
    dsfdivgdgvkdllvgrddgmvevygfdnanepvlrfdhtlsesvtsiqggcvgkdgyde
    ivvstysgwitglttepnqemqnkisslrseleqlqykvlqerekyqqssqsskaksavp
    sfsvndkftlnkddasyslilevqtaidnvliqsdvpidlldvdknsavvsfsscdsesn
    dnfllatyrcqanttrlelkirsiegqygtlqayvtpriqpktcqvrqyhikplslhqrt
    hfidhdrpmntltltgqfsfselhswvvfcmpevpekppagecvtfyfqntfldtqlest
    yrkgegvfksdnistisilkdvlskeatkrkinlnisyeinevsvkhtlklihpkleyql
    llakkvqlidalkelqvhegntnflipeyrcileeadhlqeeykkqpahlerlygmitdl
    fidkfkfkgtnvktkvpllleildsydqnaliaffdaa
    

  • Chain '8':
    Sequence, based on SEQRES records:
    >6vbu8 (8:)
    meplllawsyfrrrrfqlcadlctqmlekspcdqaawilkaraltemvyvdeidvdeegi
    aemildenaiaqvprpgtslklpgtnqtggpspavrpvtqagrpitgflrpstqsgrpgt
    ieqaiktprtaytarpiasssgrfvrlgtasmltspdgpfinlsrlnlakyaqkpklaka
    lfeyifhhendvktaldlaalstehsqykdwwwkvqigkcyyrlglyreaekqfksalkq
    qemvdtflylakvyisldqpltalnlfkqgldkfpgevtllcgiariyeemnnissatey
    ykevlkqdnthveaiacigsnhfytdqpevalrfyrrllqmgvyncqlfnnlglccfyaq
    qydmtltsferalslaeneeevadvwynlghvavgtgdtnlahqcfrlalvsnnqhaeay
    nnlavlemrrghveqakallqtasslaphmyephfnfatisdkigdlqrsyaaakkseaa
    fpdhvdtqhlikqleqhfaml
    

    Sequence, based on observed residues (ATOM records):
    >6vbu8 (8:)
    meplllawsyfrrrrfqlcadlctqmlekspcdqaawilkaraltemvyvdeidvdeegi
    aemildenaiaqvprpgtslkgpspavrpvtqagrpitgflrpstqsgrpgtieqaiktp
    rtaytarpiasssgpfinlsrlnlakyaqkpklakalfeyifhhendvktaldlaalste
    hsqykdwwwkvqigkcyyrlglyreaekqfksalkqqemvdtflylakvyisldqpltal
    nlfkqgldkfpgevtllcgiariyeemnnissateyykevlkqdnthveaiacigsnhfy
    tdqpevalrfyrrllqmgvyncqlfnnlglccfyaqqydmtltsferalslaeneeevad
    vwynlghvavgtgdtnlahqcfrlalvsnnqhaeaynnlavlemrrghveqakallqtas
    slaphmyephfnfatisdkigdlqrsyaaakkseaafpdhvdtqhlikqleqhfa
    

  • Chain '9':
    Sequence, based on SEQRES records:
    >6vbu9 (9:)
    mslfkardwwstvlgdkeefdqgclcladvdntgngqdkiivgsfmgylrifnphpvktg
    dgaqaedlllevhlrdpilqvevgkfvsgtemlhlavlhsrklcvysvsgtlgnvehgnq
    yqiklmyehnlqrtacnmtygsfggvkgrdliciqsvdgmlmvfeqesyafgrflpgsll
    pgplayssrtdsfitvsschqvesykyqvlafatdadkrqeteqqkhgsgkrlvvdwtln
    igeqaidicivsfiqsassvfvlgernffclkdngqiqfmkkldyspscflpycsvsegt
    intlignhnnmlhiyqdvtlkwatqlphvpvavrvgclhdlkgvivtlsddghlqcsylg
    tdpslfqapkvesrelnydeldmelkelqkviknvnksqdvwpltereddlkvsamvspn
    fdsvsqatdvevgadlvpsvtvkvtlknrvalqkiklsiyvqpplvltgdqftfefmape
    mtrtvgfsvylkgsysppelegnavvsysrpternpdgiprvsqckfrlplklvclpgqp
    sktashkltidtnkspvsllslfpgfakqseddqvnvmgfrflggsqvtllasktsqryr
    iqseqfedlwlitneliirlqeyfekqgikdftcsfsgsvpleeyfelidhhfelringe
    kleellseravqfraiqrrlltrfkdktpaplqhldtlldgtykqvialadaveenqdnl
    fqsftrlksathlvilliglwqklsadqiaileaaflplqqdtqelgweetvdaalshll
    ktclsksskeqalnlnsqlgipkdtsqlkkhitlfcdrlakggrlclstdaaapqtmvmp
    ggcatipesdlegrsidqdsselftnhkhlmvetpvpevsplqgvte
    

    Sequence, based on observed residues (ATOM records):
    >6vbu9 (9:)
    slfkardwwstvlgdkeefdqgclcladvdntgngqdkiivgsfmgylrifnphpaqaed
    lllevhlrdpilqvevgkfvsgtemlhlavlhsrklcvysvsgtlgnvehgnqyqiklmy
    ehnlqrtacnmtygsfggvkgrdliciqsvdgmlmvfeqesyafgrflpgsllpgplays
    srtdsfitvsschqvesykyqvlafavvdwtlnigeqaidicivsfiqsassvfvlgern
    ffclkdngqiqfmkkldyspscflpycsvsegtintlignhnnmlhiyqdvtlkwatqlp
    hvpvavrvgclhdlkgvivtlsddghlqcsylgtdpslfqapkvesrelnydeldmelke
    lqkviknvnkdlkvsamvspnsvtvkvtlknrvalqkiklsiyvqpplvltgdqftfefm
    apemtrtvgfsvylkgsysppelegnavvsysrpternpdgiprvsqckfrlplklvclp
    gqpsktashkltidtnkspvsllslfpgfavnvmgfrflggsqvtllasktsqryriqse
    qfedlwlitneliirlqeyfekqgikdftcsfsgsvpleeyfelidhhfelringeklee
    llseravqfraiqrrlltrfkdktpaplqhldtlldgtykqvialadaveenqdnlfqsf
    trlksathlvilliglwqklsadqiaileaaflplqqdtqelgweetvdaalshllktcl
    sksskeqalnlnsqlgipkdtsqlkkhitlfcdrlakggrlcls