PDB entry 6vac

View 6vac on RCSB PDB site
Description: mouse retromer (vps26/vps35/vps29) heterotrimer
Deposited on 2019-12-17, released 2020-02-19
The last revision was dated 2020-04-15, with a file datestamp of 2020-04-10.
Experiment type: EM
Resolution: 5.7 Å
R-factor: N/A
AEROSPACI score: -0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vacuolar protein sorting-associated protein 35
    Species: Mus musculus [TaxId:10090]
    Gene: VPS35, MEM3
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Vacuolar protein sorting-associated protein 26A
    Species: Mus musculus [TaxId:10090]
    Gene: VPS26A, VPS26
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Vacuolar protein sorting-associated protein 29
    Species: Mus musculus [TaxId:10090]
    Gene: Vps29
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vacA (A:)
    mpttqqspqdeqeklldeaiqavkvqsfqmkrcldknklmdalkhasnmlgelrtsmlsp
    ksyyelymaisdelhylevyltdefakgrkvadlyelvqyagniiprlyllitvgvvyvk
    sfpqsrkdilkdlvemcrgvqhplrglflrnyllqctrnilpdegeptdeettgdisdsm
    dfvllnfaemnklwvrmqhqghsrdrekrererqelrilvgtnlvrlsqlegvnverykq
    ivltgileqvvncrdalaqeylmeciiqvfpdefhlqtlnpflracaelhqnvnvkniii
    alidrlalfahredgpgipaeiklfdifsqqvatviqsrqdmpsedvvslqvslinlamk
    cypdrvdyvdkvlettveifnklnlehiatssavskeltrllkipvdtynniltvlklkh
    fhplfeyfdyesrksmscyvlsnvldynteivsqdqvdsimnlvstliqdqpdqpvedpd
    pedfadeqslvgrfihllrsddpdqqylilntarkhfgaggnqrirftlpplvfaayqla
    frykensqmddkwekkcqkifsfahqtisalikaelaelplrlflqgalaageigfenhe
    tvayefmsqafslyedeisdskaqlaaitliigtfermkcfseenheplrtqcalaaskl
    lkkpdqgravstcahlfwsgrntdkngeelhggkrvmeclkkalkianqcmdpslqvqlf
    ieilnryiyfyekendavtiqvlnqliqkiredlpnlesseeteqinkhfhntlehlrsr
    respesegpiyeglil
    

    Sequence, based on observed residues (ATOM records):
    >6vacA (A:)
    lldeaiqavkvqsfqmkrcldknklmdalkhasnmlgelrtsmlspksyyelymaisdel
    hylevyltdefakgrkvadlyelvqyagniiprlyllitvgvvyvksfpqsrkdilkdlv
    emcrgvqhplrglflrnyllqctrnilpdegeptdeettgdisdsmdfvllnfaemnklw
    vrmqhqghsrdrekrererqelrilvgtnlvrlsqlegvnverykqivltgileqvvncr
    dalaqeylmeciiqvfpdefhlqtlnpflracaelhqnvnvkniiialidrlalfahred
    gpgipaeiklfdifsqqvatviqsrqdmpsedvvslqvslinlamkcypdrvdyvdkvle
    ttveifnklnlehiatssavskeltrllkipvdtynniltvlklkhfhplfeyfdyesrk
    smscyvlsnvldynteivsqdqvdsimnlvstliqfadeqslvgrfihllrsddpdqqyl
    ilntarkhfgaggnqrirftlpplvfaayqlafrykensqmddkwekkcqkifsfahqti
    salikaelaelplrlflqgalaageigfenhetvayefmsqafslyedeisdskaqlaai
    tliigtfermkcfseenheplrtqcalaaskllkkpdqgravstcahlfwrvmeclkkal
    kianqcdpslqvqlfieilnryiyfyektiqvlnqliqkiredlpnlesseeteqinkhf
    hntlehlrsr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vacB (B:)
    msflggffgpiceidvalndgetrkmaemktedgkvekhylfydgesvsgkvnlafkqpg
    krlehqgiriefvgqielfndksnthefvnlvkelalpgeltqsrsydfefmqvekpyes
    yiganvrlryflkvtivrrltdlvkeydlivhqlatypdvnnsikmevgiedclhiefey
    nkskyhlkdvivgkiyfllvrikiqhmelqlikkeitgigpstttetetiakyeimdgap
    vkgesipirlflagydptptmrdvnkkfsvryflnlvlvdeedrryfkqqeiilwrkape
    klrkqrtnfhqrfespdsqasaeqpem
    

    Sequence, based on observed residues (ATOM records):
    >6vacB (B:)
    fgpiceidvalndgetrkmaemktedgkvekhylfydgesvsgkvnlafkqpgkrlehqg
    iriefvgqielfndksnthefvnlvkelalpgeltqsrsydfefmqvekpyesyiganvr
    lryflkvtivrrltdlvkeydlivhqlatypdvnnsikmevgiedclhiefeynkskyhl
    kdvivgkiyfllvrikiqhmelqlikkeitgigpstttetetiakyeimdgapvkgesip
    irlflagydptptmrdvnkkfsvryflnlvlvdeedrryfkqqeiilwrkape
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vacC (C:)
    mlvlvlgdlhiphrcnslpakfkkllvpgkiqhilctgnlctkesydylktlagdvhivr
    gdfdenlnypeqkvvtvgqfkiglihghqvipwgdmaslallqrqfdvdilisghthkfe
    afehenkfyinpgsatgaynaletniipsfvlmdiqastvvtyvyqligddvkverieyk
    ks
    

    Sequence, based on observed residues (ATOM records):
    >6vacC (C:)
    lvlvlgdlhiphrcnslpakfkkllvpgkiqhilctgnlctkesydylktlagdvhivrg
    dfdenlnypeqkvvtvgqfkiglihghqvipwgdaslallqrqfdvdilisghthkfeaf
    ehenkfyinpgsatgaynaletniipsfvldiqastvvtyvyqligddvkverieykks