PDB entry 6vab

View 6vab on RCSB PDB site
Description: mouse retromer sub-structure: vps35/vps35 flat dimer
Deposited on 2019-12-17, released 2020-02-19
The last revision was dated 2020-04-15, with a file datestamp of 2020-04-10.
Experiment type: EM
Resolution: 4.9 Å
R-factor: N/A
AEROSPACI score: -0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vacuolar protein sorting-associated protein 29
    Species: Mus musculus [TaxId:10090]
    Gene: Vps29
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Vacuolar protein sorting-associated protein 35
    Species: Mus musculus [TaxId:10090]
    Gene: VPS35, MEM3
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Vacuolar protein sorting-associated protein 29
    Species: Mus musculus [TaxId:10090]
    Gene: Vps29
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Vacuolar protein sorting-associated protein 35
    Species: Mus musculus [TaxId:10090]
    Gene: VPS35, MEM3
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6vabA (A:)
mlvlvlgdlhiphrcnslpakfkkllvpgkiqhilctgnlctkesydylktlagdvhivr
gdfdenlnypeqkvvtvgqfkiglihghqvipwgdmaslallqrqfdvdilisghthkfe
afehenkfyinpgsatgaynaletniipsfvlmdiqastvvtyvyqligddvkverieyk
ks

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vabB (B:)
mpttqqspqdeqeklldeaiqavkvqsfqmkrcldknklmdalkhasnmlgelrtsmlsp
ksyyelymaisdelhylevyltdefakgrkvadlyelvqyagniiprlyllitvgvvyvk
sfpqsrkdilkdlvemcrgvqhplrglflrnyllqctrnilpdegeptdeettgdisdsm
dfvllnfaemnklwvrmqhqghsrdrekrererqelrilvgtnlvrlsqlegvnverykq
ivltgileqvvncrdalaqeylmeciiqvfpdefhlqtlnpflracaelhqnvnvkniii
alidrlalfahredgpgipaeiklfdifsqqvatviqsrqdmpsedvvslqvslinlamk
cypdrvdyvdkvlettveifnklnlehiatssavskeltrllkipvdtynniltvlklkh
fhplfeyfdyesrksmscyvlsnvldynteivsqdqvdsimnlvstliqdqpdqpvedpd
pedfadeqslvgrfihllrsddpdqqylilntarkhfgaggnqrirftlpplvfaayqla
frykensqmddkwekkcqkifsfahqtisalikaelaelplrlflqgalaageigfenhe
tvayefmsqafslyedeisdskaqlaaitliigtfermkcfseenheplrtqcalaaskl
lkkpdqgravstcahlfwsgrntdkngeelhggkrvmeclkkalkianqcmdpslqvqlf
ieilnryiyfyekendavtiqvlnqliqkiredlpnlesseeteqinkhfhntlehlrsr
respesegpiyeglil

    Sequence, based on observed residues (ATOM records):
    >6vabB (B:)
fadeqslvgrfihllrsddpdqqylilntarkhfgaggnqrirftlpplvfaayqlafry
kensqmddkwekkcqkifsfahqtisalikaelaelplrlflqgalaageigfenhetva
yefmsqafslyedeisdskaqlaaitliigtfermkcfseenheplrtqcalaaskllkk
pdqgravstcahlfwrvmeclkkalkianqcmdpslqvqlfieilnryiyfyektiqvln
qliqkiredlpnlesseeteqinkhfhntlehlrsr

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6vabC (C:)
mlvlvlgdlhiphrcnslpakfkkllvpgkiqhilctgnlctkesydylktlagdvhivr
gdfdenlnypeqkvvtvgqfkiglihghqvipwgdmaslallqrqfdvdilisghthkfe
afehenkfyinpgsatgaynaletniipsfvlmdiqastvvtyvyqligddvkverieyk
ks

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vabD (D:)
mpttqqspqdeqeklldeaiqavkvqsfqmkrcldknklmdalkhasnmlgelrtsmlsp
ksyyelymaisdelhylevyltdefakgrkvadlyelvqyagniiprlyllitvgvvyvk
sfpqsrkdilkdlvemcrgvqhplrglflrnyllqctrnilpdegeptdeettgdisdsm
dfvllnfaemnklwvrmqhqghsrdrekrererqelrilvgtnlvrlsqlegvnverykq
ivltgileqvvncrdalaqeylmeciiqvfpdefhlqtlnpflracaelhqnvnvkniii
alidrlalfahredgpgipaeiklfdifsqqvatviqsrqdmpsedvvslqvslinlamk
cypdrvdyvdkvlettveifnklnlehiatssavskeltrllkipvdtynniltvlklkh
fhplfeyfdyesrksmscyvlsnvldynteivsqdqvdsimnlvstliqdqpdqpvedpd
pedfadeqslvgrfihllrsddpdqqylilntarkhfgaggnqrirftlpplvfaayqla
frykensqmddkwekkcqkifsfahqtisalikaelaelplrlflqgalaageigfenhe
tvayefmsqafslyedeisdskaqlaaitliigtfermkcfseenheplrtqcalaaskl
lkkpdqgravstcahlfwsgrntdkngeelhggkrvmeclkkalkianqcmdpslqvqlf
ieilnryiyfyekendavtiqvlnqliqkiredlpnlesseeteqinkhfhntlehlrsr
respesegpiyeglil

    Sequence, based on observed residues (ATOM records):
    >6vabD (D:)
dfadeqslvgrfihllrsddpdqqylilntarkhfgaggnqrirftlpplvfaayqlafr
ykensqmddkwekkcqkifsfahqtisalikaelaelplrlflqgalaageigfenhetv
ayefmsqafslyedeisdskaqlaaitliigtfermkcfseenheplrtqcalaaskllk
kpdqgravstcahlfwsgrntdkngeelhggkrvmeclkkalkianqcmdpslqvqlfie
ilnryiyfyekendavtiqvlnqliqkiredlpnlesseeteqinkhfhntlehlrsr