PDB entry 6v93

View 6v93 on RCSB PDB site
Description: structure of dna polymerase zeta/dna/dntp ternary complex
Deposited on 2019-12-13, released 2020-08-19
The last revision was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase zeta catalytic subunit
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: REV3, PSO1, YPL167C, P2535
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA polymerase zeta processivity subunit
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: REV7, YIL139C
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA polymerase zeta processivity subunit
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: REV7, YIL139C
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: DNA polymerase delta small subunit
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: POL31, HUS2, HYS2, SDP5, YJR006W, J1427, YJR83.7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P46957 (7-End)
      • expression tag (5-6)
  • Chain 'G':
    Compound: DNA polymerase delta subunit 3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: POL32, YJR043C, J1626
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: DNA
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'T':
    Compound: DNA
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: CA, DCP, SF4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6v93A (A:)
mdykddddkgdhnhrhkhgdplevlfqgpggdphmsresndtiqsdtvrsssksdyfriq
lnnqdyymskptfldpshgeslplnqfsqvpnirvfgalptghqvlchvhgilpymfiky
dgqitdtstlrhqrcaqvhktlevkirasfkrkkddkhdlagdklgnlnfvadvsvvkgi
pfygyhvgwnlfykisllnpsclsriselirdgkifgkkfeiyeshipyllqwtadfnlf
gcswinvdrcyfrspvlnsildidkltinddlqllldrfcdfkcnvlsrrdfprvgngli
eidilpqfiknreklqhrdihhdfleklgdisdipvkpyvssardmineltmqreelslk
eykeppetkrhvsghqwqssgefeafykkaqhktstfdgqipnfenfidknqkfsaintp
yealpqlwprlpqieinnnsmqdkknddqvnasfteyeicgvdnenegvkgsniksrsys
wlpesiaspkdstilldhqtkyhntinfsmdcamtqnmaskrklrssvsanktsllsrkr
kkvmaaglrygkrafvygeppfgyqdilnkledegfpkidykdpffsnpvdlenkpyaya
gkrfeissthvstripvqfggetvsvynkptfdmfsswkyalkpptydavqkwynkvpsm
gnkktesqismhtphskflykfasdvsgkqkrkkssvhdslthltleihantrsdkipdp
aidevsmiiwcleeetfpldldiayegimivhkasedstfptkiqhcineipvmfyesef
emfealtdlvllldpdilsgfeihnfswgyiiercqkihqfdivrelarvkcqiktklsd
twgyahssgimitgrhminiwralrsdvnltqytiesaafnilhkrlphfsfesltnmwn
akksttelktvlnywlsraqiniqllrkqdyiarnieqarligidfhsvyyrgsqfkves
fliricksesfillspgkkdvrkqkalecvplvmepesafyksplivldfqslypsimig
ynycystmigrvreinltennlgvskfslprnilallkndvtiapngvvyaktsvrkstl
skmltdildvrvmikktmneigddnttlkrllnnkqlalkllanvtygytsasfsgrmpc
sdladsivqtgretlekaidiiekdetwnakvvygdtdslfvylpgktaieafsighama
ervtqnnpkpiflkfekvyhpsiliskkryvgfsyespsqtlpifdakgietvrrdgipa
qqkiiekcirllfqtkdlskikkylqneffkiqigkvsaqdfcfakevklgayksektap
agavvvkrrinedhraepqykeripylvvkgkqgqllrercvspeeflegenleldseyy
inkilippldrlfnliginvgnwaqeivkskrasttttkvenitrvgtsatccncgeelt
kicslqlcddclekrstttlsflikklkrqkeyqtlktvcrtcsyrytsdagiendhias
kcnsydcpvfysrvkaerylrdnqsvqreealislndw

    Sequence, based on observed residues (ATOM records):
    >6v93A (A:)
sdyfriqlnnqdyymskptfldpshgeslplnqfsqvpnirvfgalptghqvlchvhgil
pymfikydgqitdtstlrhqrcaqvhktlevkirasfkklgnlnfvadvsvvkgipfygy
hvgwnlfykisllnpsclsriselirdgkifgkkfeiyeshipyllqwtadfnlfgcswi
nvdrcyfrspvlnsildidkltinddlqllldrfcdfkcnvlsrrdfprvgnglieidil
pqfiknreklqhrdihhdfleklvkpyvssardmineltmqreelslkeykeppetkrhv
sghqwqssgefeafykkaqhktstgqipnfenfidknqkfsaintpyealpqlwprlpqi
aglrygkrafvygeppfgyqdilnkledegfpkidykdpffsnpvdlenkpyayagkrfe
issthvstripvqfggetvsvynkptfdmfsswkyalkpptydavqkwynkvpsvhdslt
hltleihantrsdkipdpaidevsmiiwcleeetfpldldiayegimivhkadstfptki
qhcineipvmfyesefemfealtdlvllldpdilsgfeihnfswgyiiercqkihqfdiv
relarvkcsdtwgyahssgimitgrhminiwralrsdvnltqytiesaafnilhkrlphf
sfesltnmwnakksttelktvlnywlsraqiniqllrkqdyiarnieqarligidfhsvy
yrgsqfkvesfliricksesfillspgkkdvrkqkalecvplvmepesafyksplivldf
qslypsimigynycystmigrvreinltennlgvskfslprnilallkndvtiapngvvy
aktsvrkstlskmltdildvrvmikktmneigddnttlkrllnnkqlalkllanvtygyt
sasfsgrmpcsdladsivqtgretlekaidiiekdetwnakvvygdtdslfvylpgktai
eafsighamaervtqnnpkpiflkfekvyhpsiliskkryvgfsyespsqtlpifdakgi
etvrrdgipaqqkiiekcirllfqtkdlskikkylqneffkiqigkvsaqdfcfakevkl
gayksektapagavvvkrrinedhraepqykeripylvvkgkqgqllrercvspeefleg
enleldseyyinkilippldrlfnliginvgnwaqeekrstttlsflikklkrqkeyqtl
ktvcrtcsyrytsdagiendhiaskcnsydcpvfysrvkaerylrdnqsvqreealisl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6v93D (D:)
mnrwvekwlrvylkcyinlilfyrnvyppqsfdyttyqsfnlpqfvpinrhpalidyiee
lildvlsklthvyrfsiciinkkndlciekyvldfselqhvdkddqiitetevfdefrss
lnslimhleklpkvnddtitfeavinaielelghkldrnrrvdsleekaeierdsnwvkc
qedenlpdnngfqppkikltslvgsdvgpliihqfseklisgddkilngvysqyeegesi
fgslf

    Sequence, based on observed residues (ATOM records):
    >6v93D (D:)
mnrwvekwlrvylkcyinlilfyrnvyppqsfdyttyqsfnlpqfvpinrhpalidyiee
lildvlsklthvyrfsiciinkkndlciekyvldfitetevfdefrsslnslimhleklp
kvnddtitfeavinakikltslvgsdvgpliihqfsekl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6v93E (E:)
mnrwvekwlrvylkcyinlilfyrnvyppqsfdyttyqsfnlpqfvpinrhpalidyiee
lildvlsklthvyrfsiciinkkndlciekyvldfselqhvdkddqiitetevfdefrss
lnslimhleklpkvnddtitfeavinaielelghkldrnrrvdsleekaeierdsnwvkc
qedenlpdnngfqppkikltslvgsdvgpliihqfseklisgddkilngvysqyeegesi
fgslf

    Sequence, based on observed residues (ATOM records):
    >6v93E (E:)
mnrwvekwlrvylkcyinlilfyrnvyppqsfdyttyqsfnlpqfvpinrhpalidyiee
lildvlsklthvyrfsiciinkkndlciekyvldfselqhvditetevfdefrsslnsli
mhleklpkvnddtitfeavinaielelghkldrnrrvdsleekaeierdsnwvkcqepki
kltslvgsdvgpliihqfsekl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6v93F (F:)
gpggdlhmdalltkfnedrslqdenlsqprtrvrivddnlynksnpfqlcykkrdygsqy
yhiyqyrlktfrervlkecdkrwdagftlngqlvlkkdkvldiqgnqpcwcvgsiycemk
ykpnvldevindtygapdltksytdkeggsdeimledesgrvllvgdfirstpfitgvvv
gilgmeaeagtfqvldicyptplpqnpfpapiatcptrgkialvsglnlnntspdrllrl
eilreflmgrinnkiddisligrllicgnsvdfdiksvnkdelmisltefskflhnilps
isvdimpgtndpsdkslpqqpfhkslfdkslesyfngsnkeilnlvtnpyefsyngvdvl
avsgknindickyvipsndngesenkveegesndfkddiehrldlmectmkwqniaptap
dtlwcypytdkdpfvldkwphvyivanqpyfgtrvveiggknikiisvpefsstgmiill
dletleaetvkidi

    Sequence, based on observed residues (ATOM records):
    >6v93F (F:)
lhmdalltkfnedrslqdenlsqprtrvrivddnlynksnpfqlcykkrsqyyhiyqyrl
ktfrervlkecdkrwdagftlngqlvlkkdkvldiqgnqpcwcvgsiycemkykpnvlde
vindtygapdltksytdksdeimledesgrvllvgdfirstpfitgvvvgilgmeaeagt
fqvldicyptplpqnpfpatrgkialvsglnlnntspdrllrleilreflmgrinnkidd
isligrllicgnsvdfdiksvnkdelmisltefskflhnilpsisvdimpgtndpsdksl
pqqpfhkslfdkslesyfngsnkeilnlvtnpyefsyngvdvlavsgknindickyvips
ndnkddiehrldlmectmkwqniaptapdtlwcypytdkdpfvldkwphvyivanqpyfg
trvveiggknikiisvpefsstgmiilldletleaetvkid

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6v93G (G:)
mdqkasyfineklftevkpvlftdlihhlkigpsmakklmfdyykqttnakyncvviccy
kdqtikiihdlsnipqqdsiidcfiyafnpmdsfipyydiidqkdcltiknsyelkvses
skiiertktleekskplvrptarskttpeettgrkskskdmglrstallakmkkdrddke
tsrqnelrkrkeenlqkinkqnpereaqmkelnnlfveddldteevnggskpnspketds
ndkdknnddledllettaedslmdvpkiqqtkpsetehskepkseeepssfidedgyivt
krpatstpprkpspvvkralssskkqetpssnkrlkkqgtlesffkrkak

    Sequence, based on observed residues (ATOM records):
    >6v93G (G:)
mdqkasyfineklftevkpvlftdlihhlkigpsmakklmfdyykqttnakyncvviccy
kdqtikiihdlsnipqqdsiidcfiyafnpmdsfipyydiidqkdcltiknsyelkv

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.