PDB entry 6v86

View 6v86 on RCSB PDB site
Description: parainfluenza virus 5 l-p complex with an alternate conformation of the cd-mtase-ctd module
Deposited on 2019-12-10, released 2020-02-19
The last revision was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: EM
Resolution: 4.63 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase L
    Species: Simian virus 5 (strain W3) [TaxId:11208]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Phosphoprotein
    Species: Simian virus 5 (strain W3) [TaxId:11208]
    Gene: P/V
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Phosphoprotein
    Species: Simian virus 5 (strain W3) [TaxId:11208]
    Gene: P/V
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Phosphoprotein
    Species: Simian virus 5 (strain W3) [TaxId:11208]
    Gene: P/V
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Phosphoprotein
    Species: Simian virus 5 (strain W3) [TaxId:11208]
    Gene: P/V
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Phosphoprotein
    Species: Simian virus 5 (strain W3) [TaxId:11208]
    Gene: P/V
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6v86A (A:)
magsreillpevhlnspivkhklyyyillgnlpneidlddlgplhnqnwnqiaheesnla
qrlvnvrnflithipdlrkghwqeyvnvilwprilplipdfkindqlpllknwdklvkes
csvinagtsqciqnlsygltgrgnlftrsrelsgdrrdidlktvvaawhdsdwkrisdfw
imikfqmrqlivrqtdhndsdlityienregiiiitpelvalfntenhtltymtfeivlm
vsdmyegrhnilslctvstylnplkkrityllslvdnlafqigdavyniiallesfvyaq
lqmsdpipelrgqfhafvcseildalrgtnsftqdelrtvttnlispfqdltpdltaell
cimrlwghpmltasqaagkvresmcagkvldfptimktlaffhtilingyrrkhhgvwpp
lnlpgnaskgltelmndnteisyeftlkhwkevslikfkkcfdadageelsifmkdkais
apkqdwmsvfrrslikqrhqhhqvplpnpfnrrlllnflgddkfdpnvelqyvtsgeylh
ddtfcasyslkekeikpdgrifakltkrmrscqviaesllanhagklmkengvvmnqlsl
tkslltmsqigiisekarkstrdninqpgfqniqrnkshhskqvnqrdpsddfelaasfl
ttdlkkyclqwryqtiipfaqslnrmygyphlfewihlrlmrstlyvgdpfnppadtsqf
dldkvingdifivsprggieglcqkawtmisiaviilsatesgtrvmsmvqgdnqaiavt
trvprslptlekktiafrscnlfferlkcnnfglghhlkeqetiisshffvyskrifyqg
riltqalknasklcltadvlgectqsscsnlattvmrltengvekdicfylniymtikql
sydiifpqvsipgdqitleyinnphlvsrlallpsqlgglnylscsrlfnrnigdpvvsa
vadlkrliksgcmdywilynllgrkpgngswatlaadpysinieyqyppttalkrhtqqa
lmelstnpmlrgifsdnaqaeennlarflldrevifprvahiiieqtsvgrrkqiqgyld
strsimrksleikplsnrklneildyninylaynlallknaiepptylkamtletcsidi
arnlrklswapllggrnlegletpdpieitagalivgsgyceqcaagdnrftwfflpsgi
eiggdprdnppirvpyigsrtderrvasmayirgassslkavlrlagvyiwafgdtlenw
idaldlshtrvnitleqlqsltplptsanlthrlddgtttlkftpassytfssfthisnd
eqyltindktadsniiyqqlmitglgiletwnnppinrtfeestlhlhtgasccvrpvds
cilsealtvkphitvpysnkfvfdedplseyetakleslsfqaqlgnidavdmtgkltll
sqftarqiinaitgldesvsltndaivasdyvsnwisecmytkldelfmycgwelllels
yqmyylrvvgwsnivdysymilrripgaalnnlastlshpklfrrainldivaplnaphf
asldyikmsvdailwgckrvinvlsnggdlelvvtsedslilsdrsmnliarkltllsli
hhnglelpkikgfspdekcfalteflrkvvnsglssienlsnfmynvenprlaafasnny
yltrkllnsirdtesgqvavtsyyesleyidslkltphvpgtscieddslctndyiiwii
esnanlekypipnspeddsnfhnfklnapshhtlrplglsstawykgisccrylerlklp
qgdhlyiaegsgasmtiieylfpgrkiyynslfssgdnppqrnyapmptqfiesvpyklw
qahtdqypeifedfiplwngnaamtdigmtacvefiinrvgprtcslvhvdlessaslnq
qclskpiinaiitattvlcphgvlilkyswlpftrfstlitflwcyferitvlrstysdp
anhevylicilannfafqtvsqatgmamtltdqgftlisperinqywdghlkqerivaea
idkvvlgenalfnssdnelilkcggtpnarnlidiepvatfiefeqlictmltthlkeii
ditrsgtqdyesllltpynlgllgkistivrllterilnhtirnwlilppslrmivkqdl
efgifritsilnsdrflklspnrkyliaqltagyirkliegdcnidltrpiqkqiwkalg
cvvychdpmdqrestefidinineeidrgidgeei

    Sequence, based on observed residues (ATOM records):
    >6v86A (A:)
reillpevhlnspivkhklyyyillgnlpgplhnqnwnqiaheesnlaqrlvnvrnflit
hipdlrkghwqeyvnvilwprilplipdfkindqlpllknwdklvkescsvinagtsqci
qnlsygltgrgnlftrdidlktvvaawhdsdwkrisdfwimikfqmrqlivrqtdhlity
ienregiiiitpelvalfntltymtfeivlmvsdmyegrhnilslctvstylnplkkrit
yllslvdnlafqigdavyniiallesfvyaqlqmsdpipelrgqfhafvcseildalrgt
nsftqdelrtvttnlispfqdltpdltaellcimrlwghpmltasqaagkvresmcagkv
ldfptimktlaffhtilingyrrkhhgvwpplnlpgnaskgltelmndnteisyeftlkh
wkevslikfkkcfdadageelsifmkdkaisapkqdwmsvfrrslpnpfnrrlllnflgd
dkfdpnvelqyvtsghddtfcasysfakltkrmrscqviaesllanhagklmkengvvmn
qlsltkslltmsqigiisaasflttdlkkyclqwryqtiipfaqslnrmygyphlfewih
lrlmrstlyvfnppadtsqfdldifivspgieglcqkawtmisiaviilsatesgtrvms
mvqgdnqaiavttrvprslptlekktiafrscnlfferlkcnnfglghhlkeqetiissh
ffvyskrifyqgriltqalknasklcltadvlgectqsscsnlattvmrltengvekdic
fylniymtikqlsydiifpqvsipgdqitleyinnphlvsrlallpsqlgglnylscsrl
fnrnigdpvvsavadlkrliksgcmdywilynllgrkpgngswatlaadpysinieyqyp
pttalkrhtqqalmelstnpmlrgifsdnaqaeennlarflldrevifprvahiiieqts
vgrrkqiqgyldstrsimrksleikplsnrklneildyninylaynlallknaiepptyl
kamtletcsidiarnlrklswapllggrnlegletpdpieitagalivgsgyceqcftwf
flpsgieiggdprdnppirvpyigsssslkavlrlagvyiwafgdtlenwidaldlshtr
vnitleqlqsltplptsanlthrlddgtttlkftpassytfssfthisndeqyltindkt
adsniiyqqlmitglgiletwnnppinrtfeestlhlhtgasccvrpvdscilsealtvk
phitvpygkltllsqftarqiinaitisecmytkldelfmycgwelllelsyqmyylrvv
gwsnivdysymilrripgaalnnlastlshpklfrrainldivaplasldyikmsvdail
wgckrvinvlsnggdlelvvtdrsmnliarkltllslihhnglelpkikgfspdekcfal
teflrkvvnsglssienlsnfmyaafasnnyyltrkllnsirdtesgqvavtctndyiiw
iiesnanlekypipnspeddsnfhnfklnapshhtlrplglsstawykgisccrylerlk
lpqgdhlyiaegsgasmtiieylfpgrkiyynslfssgmptqfiesvpyklwqaigmtac
vefiinrcslvhvdlessaslnqqclskpiinaiitatphgvlilkyswlpftrfstlit
flwcyferitvlrstysdpanhevylitvsqatgmamtltdqgftlisperinqywdghl
kqerivaeaidkvvlgenalfnssdnelilepvatfiefeqlictmltthlkeiiditrg
llgkistivrllterilnhtirnwlilppslrmivkqdlefgifritsilnsdrliaqlt
agyirkliegltrpiqkqiwkalgcvvych

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6v86B (B:)
mdptdlsfspdeinklietglntveyftsqqvtgtsslgkntippgvtglltnaaeakiq
estnhqkgsvgggakpkkprpkiaivpaddktvpgkpipnpllgldstpstqtvldlsgk
tlpsgsykgvklakfgkenlmtrfieeprenpiatsspidfkrgagipagsiegstqsdg
wemksrslsgaihpvlqsplqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkv
drilssqsliqtikndivglkagmatlegmittvkimdpgvpsnvtvedvrktlsnhavv
vpesfndsfltqsedvisldelarptatsvkkivrkvppqkdltglkitleqlakdcisk
pkmreeyllkinqasseaqlidlkkaiirsai

    Sequence, based on observed residues (ATOM records):
    >6v86B (B:)
plqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkvdrilssqsliqtikndiv
glkagmatlegm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6v86C (C:)
mdptdlsfspdeinklietglntveyftsqqvtgtsslgkntippgvtglltnaaeakiq
estnhqkgsvgggakpkkprpkiaivpaddktvpgkpipnpllgldstpstqtvldlsgk
tlpsgsykgvklakfgkenlmtrfieeprenpiatsspidfkrgagipagsiegstqsdg
wemksrslsgaihpvlqsplqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkv
drilssqsliqtikndivglkagmatlegmittvkimdpgvpsnvtvedvrktlsnhavv
vpesfndsfltqsedvisldelarptatsvkkivrkvppqkdltglkitleqlakdcisk
pkmreeyllkinqasseaqlidlkkaiirsai

    Sequence, based on observed residues (ATOM records):
    >6v86C (C:)
splqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkvdrilssqsliqtikndi
vglkagmatlegmi

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6v86D (D:)
mdptdlsfspdeinklietglntveyftsqqvtgtsslgkntippgvtglltnaaeakiq
estnhqkgsvgggakpkkprpkiaivpaddktvpgkpipnpllgldstpstqtvldlsgk
tlpsgsykgvklakfgkenlmtrfieeprenpiatsspidfkrgagipagsiegstqsdg
wemksrslsgaihpvlqsplqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkv
drilssqsliqtikndivglkagmatlegmittvkimdpgvpsnvtvedvrktlsnhavv
vpesfndsfltqsedvisldelarptatsvkkivrkvppqkdltglkitleqlakdcisk
pkmreeyllkinqasseaqlidlkkaiirsai

    Sequence, based on observed residues (ATOM records):
    >6v86D (D:)
plqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkvdrilssqsliqtikndiv
glkagmatlegm

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6v86E (E:)
mdptdlsfspdeinklietglntveyftsqqvtgtsslgkntippgvtglltnaaeakiq
estnhqkgsvgggakpkkprpkiaivpaddktvpgkpipnpllgldstpstqtvldlsgk
tlpsgsykgvklakfgkenlmtrfieeprenpiatsspidfkrgagipagsiegstqsdg
wemksrslsgaihpvlqsplqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkv
drilssqsliqtikndivglkagmatlegmittvkimdpgvpsnvtvedvrktlsnhavv
vpesfndsfltqsedvisldelarptatsvkkivrkvppqkdltglkitleqlakdcisk
pkmreeyllkinqasseaqlidlkkaiirsai

    Sequence, based on observed residues (ATOM records):
    >6v86E (E:)
splqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkvdrilssqsliqtikndi
vglkagmatlegmi

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6v86F (F:)
mdptdlsfspdeinklietglntveyftsqqvtgtsslgkntippgvtglltnaaeakiq
estnhqkgsvgggakpkkprpkiaivpaddktvpgkpipnpllgldstpstqtvldlsgk
tlpsgsykgvklakfgkenlmtrfieeprenpiatsspidfkrgagipagsiegstqsdg
wemksrslsgaihpvlqsplqqgdlnalvtsvqslalnvneilntvrnldsrmnqletkv
drilssqsliqtikndivglkagmatlegmittvkimdpgvpsnvtvedvrktlsnhavv
vpesfndsfltqsedvisldelarptatsvkkivrkvppqkdltglkitleqlakdcisk
pkmreeyllkinqasseaqlidlkkaiirsai

    Sequence, based on observed residues (ATOM records):
    >6v86F (F:)
lkitleqlakdciskpkmreeyllkinqasseaqlidlkkaiirsai