PDB entry 6v7o

View 6v7o on RCSB PDB site
Description: structural elucidation of peptide binding to klhl-12, a substrate specific adapter protein in a cul3-ring e3 ligase complex
Deposited on 2019-12-09, released 2020-02-19
The last revision was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: kelch-like protein 12
    Species: Homo sapiens [TaxId:9606]
    Gene: KLHL12, C3IP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: kelch-like protein 12
    Species: Homo sapiens [TaxId:9606]
    Gene: KLHL12, C3IP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Dvl3-peptide
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6V7O (0-End)
  • Chain 'D':
    Compound: Dvl3-peptide
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6V7O (0-End)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6v7oA (A:)
smqgprtrarlganevllvvggfgsqqspidvvekydpktqewsflpsitrkrryvasvs
lhdriyviggydgrsrlssvecldytadedgvwysvapmnvrrglagattlgdmiyvsgg
fdgsrrhtsmerydpnidqwsmlgdmqtaregaglvvasgviyclggydglnilnsveky
dphtghwtnvtpmatkrsgagvallndhiyvvggfdgtahlssveaynirtdswttvtsm
ttprcyvgatvlrgrlyaiagydgnsllssiecydpiidswevvtsmgtqrcdagvcvlr
e

    Sequence, based on observed residues (ATOM records):
    >6v7oA (A:)
anevllvvggfgsqqspidvvekydpktqewsflpsitrkrryvasvslhdriyviggyd
grsrlssvecldygvwysvapmnvrrglagattlgdmiyvsggfdgsrrhtsmerydpni
dqwsmlgdmqtaregaglvvasgviyclggydglnilnsvekydphtghwtnvtpmatkr
sgagvallndhiyvvggfdgtahlssveaynirtdswttvtsmttprcyvgatvlrgrly
aiagydgnsllssiecydpiidswevvtsmgtqrcdagvcvlre

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6v7oB (B:)
smqgprtrarlganevllvvggfgsqqspidvvekydpktqewsflpsitrkrryvasvs
lhdriyviggydgrsrlssvecldytadedgvwysvapmnvrrglagattlgdmiyvsgg
fdgsrrhtsmerydpnidqwsmlgdmqtaregaglvvasgviyclggydglnilnsveky
dphtghwtnvtpmatkrsgagvallndhiyvvggfdgtahlssveaynirtdswttvtsm
ttprcyvgatvlrgrlyaiagydgnsllssiecydpiidswevvtsmgtqrcdagvcvlr
e

    Sequence, based on observed residues (ATOM records):
    >6v7oB (B:)
anevllvvggfgsqqspidvvekydpktqewsflpsitrkrryvasvslhdriyviggyd
grsrlssvecldyvwysvapmnvrrglagattlgdmiyvsggfdgsrrhtsmerydpnid
qwsmlgdmqtaregaglvvasgviyclggydglnilnsvekydphtghwtnvtpmatkrs
gagvallndhiyvvggfdgtahlssveaynirtdswttvtsmttprcyvgatvlrgrlya
iagydgnsllssiecydpiidswevvtsmgtqrcdagvcvlre

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6v7oC (C:)
pgappgrdla

    Sequence, based on observed residues (ATOM records):
    >6v7oC (C:)
pgappgr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6v7oD (D:)
pgappgrdla

    Sequence, based on observed residues (ATOM records):
    >6v7oD (D:)
pgappg