PDB entry 6v4d

View 6v4d on RCSB PDB site
Description: structure of the rat vesicular glutamate transporter 2 determined by single particle cryo-em
Deposited on 2019-11-27, released 2020-05-20
The last revision was dated 2020-06-03, with a file datestamp of 2020-05-29.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vesicular glutamate transporter 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Slc17a6, Dnpi, Vglut2
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6v4dA (A:)
    metieltedgkplevpekkaplcdctcfglprryiiaimsglgfcisfgircnlgvaivd
    mvnnstihrggkvikekakfnwdpetvgmihgsffwgyiitqipggyiasrlaanrvfga
    ailltstlnmlipsaarvhygcvifvrilqglvegvtypachgiwskwapplersrlatt
    sfcgsyagaviamplagilvqytgwssvfyvygsfgmvwymfwllvsyespakhptitde
    erryieesigesanllgamekfktpwrkfftsmpvyaiivanfcrswtfylllisqpayf
    eevfgfeiskvgmlsavphlvmtiivpiggqiadflrskqilstttvrkimncggfgmea
    tlllvvgyshtrgvaisflvlavgfsgfaisgfnvnhldiapryasilmgisngvgtlsg
    mvcpiivgamtknksreewqyvfliaalvhyggvifyalfasgekqpwadpeetseekcg
    fihedeldeetgditqnyinygttksygatgrplevlfqgphhhhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6v4dA (A:)
    lcdctcfglprryiiaimsglgfcisfgircnlgvaivdmnwdpetvgmihgsffwgyii
    tqipggyiasrlaanrvfgaailltstlnmlipsaarvhygcvifvrilqglvegvtypa
    chgiwskwapplersrlattsfcgsyagaviamplagilvqytgwssvfyvygsfgmvwy
    mfwllvsyespakhptitdeerryieesigesfktpwrkfftsmpvyaiivanfcrswtf
    ylllisqpayfeevfgfeiskvgmlsavphlvmtiivpiggqiadflrskqilstttvrk
    imncggfgmeatlllvvgyshtrgvaisflvlavgfsgfaisgfnvnhldiapryasilm
    gisngvgtlsgmvcpiivgamtknksreewqyvfliaalvhyggvifyalfasgekqpwa
    dp