PDB entry 6v46

View 6v46 on RCSB PDB site
Description: The crystal structure of hemagglutinin from A/turkey/Ontario/6118/1968 (H8N4)
Class: viral protein
Keywords: Influenza, avian, H8, VIRAL PROTEIN
Deposited on 2019-11-27, released 2020-06-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4) [TaxId:311175]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6v46a_
  • Chain 'B':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4) [TaxId:311175]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6v46b_
  • Chain 'C':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4) [TaxId:311175]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6v46c_
  • Chain 'D':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4) [TaxId:311175]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6v46d_
  • Chain 'E':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4) [TaxId:311175]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6v46e_
  • Chain 'F':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4) [TaxId:311175]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6v46f_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6v46A (A:)
adpgdricigyqsnnstdtvntlieqnvpvtqtmelvetekhpaycntdlgaplelrdck
ieaviygnpkcdihlkdqgwsyiverpsapegmcypgsvenleelrfvfssaasykrirl
fdysrwnvtrsgtskacnastggqsfyrsinwltkkkpdtydfnegayvnnedgdiiflw
gihhppdtkeqttlyknantlssvttntinrsfqpnigprplvrgqqgrmdyywgilkrg
etlkirtngnliapefgyllkgesygriiqnedipigncntkcqtyagainsskpfqnas
rhymgecpkyvkkaslrlavglrntpsvepr

    Sequence, based on observed residues (ATOM records): (download) 
    >6v46A (A:)
dricigyqsnnstdtvntlieqnvpvtqtmelvetekhpaycntdlgaplelrdckieav
iygnpkcdihlkdqgwsyiverpsapegmcypgsvenleelrfvfssaasykrirlfdys
rwnvtrsgtskacnastggqsfyrsinwltkkkpdtydfnegayvnnedgdiiflwgihh
ppdtkeqttlyknantlssvttntinrsfqpnigprplvrgqqgrmdyywgilkrgetlk
irtngnliapefgyllkgesygriiqnedipigncntkcqtyagainsskpfqnasrhym
gecpkyvkkaslrlavglrntps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6v46B (B:)
glfgaiagfieggwsgmidgwygfhhsnsegtgmaadqkstqeaidkitnkvnnivdkmn
refevvnhefsevekrinmindkiddqiedlwaynaellvllenqktldehdsnvknlfd
evkrrlsanaidagngcfdilhkcdnecmetikngtydhkeyeeeaklerskinsgrlvp
rgs

    Sequence, based on observed residues (ATOM records): (download) 
    >6v46B (B:)
iagfieggwsgmidgwygfhhsnsegtgmaadqkstqeaidkitnkvnnivdkmnrefev
vnhefsevekrinmindkiddqiedlwaynaellvllenqktldehdsnvknlfdevkrr
lsanaidagngcfdilhkcdnecmetikngtydhkeyeeeaklers

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6v46C (C:)
adpgdricigyqsnnstdtvntlieqnvpvtqtmelvetekhpaycntdlgaplelrdck
ieaviygnpkcdihlkdqgwsyiverpsapegmcypgsvenleelrfvfssaasykrirl
fdysrwnvtrsgtskacnastggqsfyrsinwltkkkpdtydfnegayvnnedgdiiflw
gihhppdtkeqttlyknantlssvttntinrsfqpnigprplvrgqqgrmdyywgilkrg
etlkirtngnliapefgyllkgesygriiqnedipigncntkcqtyagainsskpfqnas
rhymgecpkyvkkaslrlavglrntpsvepr

    Sequence, based on observed residues (ATOM records): (download) 
    >6v46C (C:)
dricigyqsnnstdtvntlieqnvpvtqtmelvetekhpaycntdlgaplelrdckieav
iygnpkcdihlkdqgwsyiverpsapegmcypgsvenleelrfvfssaasykrirlfdys
rwnvtrsgtskacnastggqsfyrsinwltkkkpdtydfnegayvnnedgdiiflwgihh
ppdtkeqttlyknantlssvttntinrsfqpnigprplvrgqqgrmdyywgilkrgetlk
irtngnliapefgyllkgesygriiqnedipigncntkcqtyagainsskpfqnasrhym
gecpkyvkkaslrlavglrntps

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6v46D (D:)
glfgaiagfieggwsgmidgwygfhhsnsegtgmaadqkstqeaidkitnkvnnivdkmn
refevvnhefsevekrinmindkiddqiedlwaynaellvllenqktldehdsnvknlfd
evkrrlsanaidagngcfdilhkcdnecmetikngtydhkeyeeeaklerskinsgrlvp
rgs

    Sequence, based on observed residues (ATOM records): (download) 
    >6v46D (D:)
iagfieggwsgmidgwygfhhsnsegtgmaadqkstqeaidkitnkvnnivdkmnrefev
vnhefsevekrinmindkiddqiedlwaynaellvllenqktldehdsnvknlfdevkrr
lsanaidagngcfdilhkcdnecmetikngtydhkeyeeeaklers

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6v46E (E:)
adpgdricigyqsnnstdtvntlieqnvpvtqtmelvetekhpaycntdlgaplelrdck
ieaviygnpkcdihlkdqgwsyiverpsapegmcypgsvenleelrfvfssaasykrirl
fdysrwnvtrsgtskacnastggqsfyrsinwltkkkpdtydfnegayvnnedgdiiflw
gihhppdtkeqttlyknantlssvttntinrsfqpnigprplvrgqqgrmdyywgilkrg
etlkirtngnliapefgyllkgesygriiqnedipigncntkcqtyagainsskpfqnas
rhymgecpkyvkkaslrlavglrntpsvepr

    Sequence, based on observed residues (ATOM records): (download) 
    >6v46E (E:)
dricigyqsnnstdtvntlieqnvpvtqtmelvetekhpaycntdlgaplelrdckieav
iygnpkcdihlkdqgwsyiverpsapegmcypgsvenleelrfvfssaasykrirlfdys
rwnvtrsgtskacnastggqsfyrsinwltkkkpdtydfnegayvnnedgdiiflwgihh
ppdtkeqttlyknantlssvttntinrsfqpnigprplvrgqqgrmdyywgilkrgetlk
irtngnliapefgyllkgesygriiqnedipigncntkcqtyagainsskpfqnasrhym
gecpkyvkkaslrlavglrntps

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6v46F (F:)
glfgaiagfieggwsgmidgwygfhhsnsegtgmaadqkstqeaidkitnkvnnivdkmn
refevvnhefsevekrinmindkiddqiedlwaynaellvllenqktldehdsnvknlfd
evkrrlsanaidagngcfdilhkcdnecmetikngtydhkeyeeeaklerskinsgrlvp
rgs

    Sequence, based on observed residues (ATOM records): (download) 
    >6v46F (F:)
iagfieggwsgmidgwygfhhsnsegtgmaadqkstqeaidkitnkvnnivdkmnrefev
vnhefsevekrinmindkiddqiedlwaynaellvllenqktldehdsnvknlfdevkrr
lsanaidagngcfdilhkcdnecmetikngtydhkeyeeeaklers