PDB entry 6v3h

View 6v3h on RCSB PDB site
Description: structure of npc1-like intracellular cholesterol transporter 1 (npc1l1) in complex with an ezetimibe analog
Deposited on 2019-11-25, released 2020-07-01
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NPC1-like intracellular cholesterol transporter 1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: NPC1L1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: QO1, NAG, Y01

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6v3hA (A:)
    elytpkheagvctfyeecgknpelsggltslsnvsclsntparhvtgehlallqricprl
    yngpnttfaccstkqllslessmsitkalltrcpacsdnfvslhchntcspdqslfinvt
    rvvergageppavvayeafyqrsfaekayescsqvripaaaslavgsmcgvygsalcnaq
    rwlnfqgdtgnglaplditfhllepgqalpdgiqplngkiapcnesqgddsavcscqdca
    ascpvipppealrpsfymgrmpgwlaliiiftavfvllsavlvrlrvvsnrnknkaegpq
    eapklphkhklsphtilgrffqnwgtrvaswpltvlalsfivvialaagltfielttdpv
    elwsapksqarkeksfhdehfgpffrtnqifvtarnrssykydslllgsknfsgilsldf
    llellelqerlrhlqvwspeaernislqdicyaplnpyntslsdccvnsllqyfqnnrtl
    lmltanqtlngqtslvdwkdhflycanapltfkdgtslalscmadygapvfpflavggyq
    gtdyseaealiitfslnnypaddprmaqaklweeaflkemesfqrntsdkfqvafsaers
    ledeinrttiqdlpvfavsyiivflyislalgsysrcsrvaveskatlglggvivvlgav
    laamgfysylgvpsslviiqvvpflvlavgadnififvleyqrlprmpgeqreahigrtl
    gsvapsmllcslseaicfflgaltpmpavrtfaltsglaiildfllqmtafvallsldsk
    rqeasrpdvlccfstrklpppkekeglllrffrkiyapfllhrfirpvvmllfltlfgan
    lylmcninvgldqelalpkdsylidyflflnrylevgppvyfvttsgfnfsseagmnatc
    ssagcksfsltqkiqyasefpdqsyvaiaasswvddfidwltpsssccrlyirgphkdef
    cpstdtsfnclkncmnrtlgpvrptaeqfhkylpwflndppnircpkgglaayrtsvnls
    sdgqviasqfmayhkplrnsqdftealrasrllaanitadlrkvpgtdpnfevfpytisn
    vfyqqyltvlpegiftlalcfvptfvvcylllgldmcsgilnllsiimilvdtiglmavw
    gisynavslinlvtavgmsvefvshitrsfavstkptrlerakdatvfmgsavfagvamt
    nfpgililgfaqaqliqifffrlnllitllgllhglvflpvvlsylgpdvnqalvqeekl
    aseaavapepscpqypspadadanvnygfapelahganaarsslpksdqkfenlyfqgdy
    kddddkhhhhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6v3hA (A:)
    lytpkheagvctfyeecgknpelsggltslsnvsclsntparhvtgehlallqricprly
    ngpnttfaccstkqllslessmsitkalltrcpacsdnfvslhchntcspdqslfinvtr
    vvergageppavvayeafyqrsfaekayescsqvripaaaslavgsmcgvygsalcnaqr
    wlnfqgdtgnglaplditfhllepgqalpdgiqplngkiapcnesqgddsavcscqdcaa
    scpvipppealrpsfymgrmpgwlaliiiftavfvllsavlvrlrvvsnrnksphtilgr
    ffqnwgtrvaswpltvlalsfivvialaagltfielttdpvelwsapksqarkeksfhde
    hfgpffrtnqifvtarnrssykydslllgsknfsgilsldfllellelqerlrhlqvwsp
    eaernislqdicyaplnpyntslsdccvnsllqyfqnnrtllmltanqtlngqtslvdwk
    dhflycanapltfkdgtslalscmadygapvfpflavggyqgtdyseaealiitfslnny
    paddprmaqaklweeaflkemesfqrntsdkfqvafsaersledeinrttiqdlpvfavs
    yiivflyislalgsysrcsrvaveskatlglggvivvlgavlaamgfysylgvpsslvii
    qvvpflvlavgadnififvleyqrlprmpgeqreahigrtlgsvapsmllcslseaicff
    lgaltpmpavrtfaltsglaiildfllqmtafvallsldskrqeasrpdvlcckeglllr
    ffrkiyapfllhrfirpvvmllfltlfganlylmcninvgldqelalpkdsylidyflfl
    nrylevgppvyfvttsgfnfsseagmnatcssagcksfsltqkiqyasefpdqsyvaiaa
    sswvddfidwltpsssccrlyirgphkdefcpstdtsfnclkncmnrtlgpvrptaeqfh
    kylpwflndppnircpkgglaayrtsvnlssdgqviasqfmayhkplrnsqdftealras
    rllaanitadlrkvpgtdpnfevfpytisnvfyqqyltvlpegiftlalcfvptfvvcyl
    llgldmcsgilnllsiimilvdtiglmavwgisynavslinlvtavgmsvefvshitrsf
    avstkptrlerakdatvfmgsavfagvamtnfpgililgfaqaqliqifffrlnllitll
    gllhglvflpvvlsylgpdvnqalvqeeklas