PDB entry 6uz6

View 6uz6 on RCSB PDB site
Description: Crystal structure of GLUN1/GLUN2A-4M mutant ligand-binding domain in complex with glycine and glutamate
Class: membrane protein
Keywords: NMDAR, ligand-binding domain, agonist, MEMBRANE PROTEIN
Deposited on 2019-11-14, released 2020-01-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-05, with a file datestamp of 2020-01-31.
Experiment type: XRAY
Resolution: 1.66 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, NMDA 1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin1, Nmdar1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35439 (Start-151)
      • linker (152-153)
    • Uniprot P35439 (154-End)
    Domains in SCOPe 2.08: d6uz6a_
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, NMDA 2A
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin2a
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00959 (0-137)
      • engineered mutation (12)
      • linker (138-139)
    • Uniprot Q00959 (140-279)
      • engineered mutation (217)
      • engineered mutation (219-220)
      • conflict (237)
    Domains in SCOPe 2.08: d6uz6b_
  • Heterogens: GLU, GLY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6uz6A (A:)
    gmstrlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvp
    qccygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadm
    ivapltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqss
    vdiyfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvt
    tgelffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqecds
    

    Sequence, based on observed residues (ATOM records): (download)
    >6uz6A (A:)
    strlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvpqc
    cygfcidlliklartmnftyevhlvadgkfgtqervsnkkewngmmgellsgqadmivap
    ltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdiy
    frrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttgel
    ffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqe
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6uz6B (B:)
    ddnhlsivtleerpfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfci
    dilkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersev
    vdfsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypy
    mhqymtrfnqrgvedalvslktgkldafiydaavlnymarkdegcklvtigsgyifattg
    ygialqkgspwkrqidlallqfvgdgemeeletlwltgic