PDB entry 6ut6

View 6ut6 on RCSB PDB site
Description: cryo-em structure of the escherichia coli mcrbc complex
Deposited on 2019-10-29, released 2020-10-21
The last revision was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: EM
Resolution: 3.28 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Protein McrC
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrC, b4345, JW5789
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GDP, GSP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ut6A (A:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippmsktesycledalndlfip
ettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfhqsysyed
fiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgevmmlmehd
krgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfidiepgfd
tpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccgledgtsp
dtqwlneivmtdiaplleeyffddpykqqkwtnkllgds

    Sequence, based on observed residues (ATOM records):
    >6ut6A (A:)
tesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekap
qrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinra
nlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrvdyalrr
rfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighs
yfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkll

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ut6B (B:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippmsktesycledalndlfip
ettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfhqsysyed
fiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgevmmlmehd
krgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfidiepgfd
tpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccgledgtsp
dtqwlneivmtdiaplleeyffddpykqqkwtnkllgds

    Sequence, based on observed residues (ATOM records):
    >6ut6B (B:)
tesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekap
qrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinra
nlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrvdyalrr
rfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighs
yfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkll

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ut6C (C:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippmsktesycledalndlfip
ettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfhqsysyed
fiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgevmmlmehd
krgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfidiepgfd
tpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccgledgtsp
dtqwlneivmtdiaplleeyffddpykqqkwtnkllgds

    Sequence, based on observed residues (ATOM records):
    >6ut6C (C:)
tesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekap
qrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinra
nlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrdyalrrr
fsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsy
fccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkll

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ut6D (D:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippmsktesycledalndlfip
ettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfhqsysyed
fiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgevmmlmehd
krgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfidiepgfd
tpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccgledgtsp
dtqwlneivmtdiaplleeyffddpykqqkwtnkllgds

    Sequence, based on observed residues (ATOM records):
    >6ut6D (D:)
tesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekap
qrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinra
nlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdy
alrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfr
ighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkll

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ut6E (E:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippmsktesycledalndlfip
ettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfhqsysyed
fiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgevmmlmehd
krgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfidiepgfd
tpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccgledgtsp
dtqwlneivmtdiaplleeyffddpykqqkwtnkllgds

    Sequence, based on observed residues (ATOM records):
    >6ut6E (E:)
tesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekap
qrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinra
nlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdy
alrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfr
ighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkll

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ut6F (F:)
mesiqpwiekfikqaqqqrsqstkdyptsyrnlrvklsfgygnftsipwfaflgegqeas
ngiypvilyykdfdelvlaygisdtnephaqwqfssdipktiaeyfqatsgvypkkygqs
yyacsqkvsqgidytrfasmldniindyklifnsgksvippmsktesycledalndlfip
ettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfhqsysyed
fiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgevmmlmehd
krgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfidiepgfd
tpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccgledgtsp
dtqwlneivmtdiaplleeyffddpykqqkwtnkllgds

    Sequence, based on observed residues (ATOM records):
    >6ut6F (F:)
tesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekap
qrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinra
nlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdy
alrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfr
ighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkll

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ut6G (G:)
meqpvipvrniyymltyawgylqeikqanleaipgnnlldilgyvlnkgvlqlsrrglel
dynpnteiipgikgriefaktirgfhlnhgktvstfdmlnedtlanriikstlailikhe
klnstirdearslyrklpgistlhltpqhfsylnggkntryykfvisvckfivnnsipgq
nkghyrfydfernekemsllyqkflyefcrreltsanttrsylkwdassisdqslnllpr
metditirssekilivdakyyksifsrrmgtekfhsqnlyqlmnylwslkpengeniggl
liyphvdtavkhrykingfdiglctvnlgqewpcihqelldifdeylk

    Sequence, based on observed residues (ATOM records):
    >6ut6G (G:)
qpvipvrniyymltyawgylqeikqanleaipgnnlldilgyvlnkgvlqlsrrgleldy
npnteiipgikgriefaktirgfhlnhgktvstfdmlnedtlanriikstlailikhekl
nstirdearslyrklpgistlhltpqhfsylnggkntryykfvisvckfivnnsipgqnk
ghyrfydfernekemsllyqkflyefcrreltsanttrsylkwdassisdqslnllprme
tditirssekilivdakyyksifsrrmgtekfhsqnlyqlmnylwslnigglliyphvdt
avkhrykingfdiglctvnlgqewpcihqelldifdeyl