PDB entry 6usu

View 6usu on RCSB PDB site
Description: Crystal structure of GluN1/GluN2A ligand-binding domain in complex with L689,560 and glutamate
Class: metal transport
Keywords: NMDARs, LBD, Ion channels, METAL TRANSPORT
Deposited on 2019-10-28, released 2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, NMDA 1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin1, Nmdar1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35439 (Start-151)
      • linker (153)
    • Uniprot P35439 (154-End)
    Domains in SCOPe 2.08: d6usua_
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, NMDA 2A
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin2a
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00959 (Start-138)
      • linker (139-140)
    • Uniprot Q00959 (141-End)
      • conflict (238)
    Domains in SCOPe 2.08: d6usub_
  • Heterogens: QGM, GLU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6usuA (A:)
    gmstrlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvp
    qccygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadm
    ivapltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqss
    vdiyfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvt
    tgelffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqecds
    

    Sequence, based on observed residues (ATOM records): (download)
    >6usuA (A:)
    rlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndgsprhtvpqccygfc
    idlliklartmnftyevhlvadgkfgtqervkkewngmmgellsgqadmivapltinner
    aqyiefskpfkyqgltilvkktritgindprlrnpsdkfiyatvkqssvdiyfrrqvels
    tmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqcdlvttgelffrsgfgig
    mrkdspwkqnvslsilkshengfmedldktwvry
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6usuB (B:)
    sddnhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfc
    idilkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineerse
    vvdfsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnyp
    ymhqymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifatt
    gygialqkgspwkrqidlallqfvgdgemeeletlwltgichn
    

    Sequence, based on observed residues (ATOM records): (download)
    >6usuB (B:)
    dnhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcid
    ilkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevv
    dfsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypym
    hqymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgy
    gialqkgspwkrqidlallqfvgdgemeeletlwltgic