PDB entry 6us5

View 6us5 on RCSB PDB site
Description: dna polymerase i large fragment from bacillus stearothermophilus with dna template, 3'-amino primer, dgpnhpp analog, and mn2+
Deposited on 2019-10-24, released 2020-03-18
The last revision was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: DPO1, polA
    Database cross-references and differences (RAF-indexed):
    • Uniprot D9N168 (0-578)
      • engineered mutation (412)
      • variant (415)
  • Chain 'B':
    Compound: DNA (5'-d(*gp*cp*gp*ap*tp*cp*ap*gp*(c42))-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA (5'-d(*cp*ap*cp*gp*cp*tp*gp*ap*tp*cp*gp*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA polymerase I
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: DPO1, polA
    Database cross-references and differences (RAF-indexed):
    • Uniprot D9N168 (0-578)
      • engineered mutation (412)
      • variant (415)
  • Chain 'E':
    Compound: DNA (5'-d(*gp*cp*gp*ap*tp*cp*ap*gp*(c42))-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*cp*ap*cp*gp*cp*tp*gp*ap*tp*cp*gp*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: C42, XG4, MN, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6us5A (A:)
kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqf
vawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmk
qyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllvel
eqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvi
lfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvrp
atkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysqi
elrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygis
dyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdit
srnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileap
keemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6us5D (D:)
kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqf
vawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmk
qyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllvel
eqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvi
lfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvrp
atkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysqi
elrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygis
dyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdit
srnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileap
keemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.