PDB entry 6urm

View 6urm on RCSB PDB site
Description: Crystal structure of vaccine-elicited receptor-binding site targeting antibody LPAF-a.01 in complex with Hemagglutinin H1 A/California/04/2009
Class: immune system/viral protein
Keywords: Influenza, antibody, receptor-binding site, IMMUNE SYSTEM, IMMUNE SYSTEM-VIRAL PROTEIN complex
Deposited on 2019-10-23, released 2020-09-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-16, with a file datestamp of 2020-09-11.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: The heavy chain of antibody LPAF-a.01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6URM (0-End)
    Domains in SCOPe 2.08: d6urmd_
  • Chain 'E':
    Compound: The light chain of antibody LPAF-a.01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6URM (0-End)
    Domains in SCOPe 2.08: d6urme1, d6urme2
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: The heavy chain of antibody LPAF-a.01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6URM (0-End)
    Domains in SCOPe 2.08: d6urmh_
  • Chain 'L':
    Compound: The light chain of antibody LPAF-a.01
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6URM (0-End)
    Domains in SCOPe 2.08: d6urml1, d6urml2
  • Heterogens: NAG, SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6urmD (D:)
qvtlresgpalvkptqtltltctfsgfslstsgmcltwirrppgkalewlalidwddnky
yntslrtrltiskdtsknqvvlkvtdmdpvdtgtyycarmlygdlggrfdpwgqgtlvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >6urmD (D:)
qvtlresgpalvkptqtltltctfsgfslstsgmcltwirrppgkalewlalidwddnky
yntslrtrltiskdtsknqvvlkvtdmdpvdtgtyycarmlygdlggrfdpwgqgtlvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6urmE (E:)
syeltqplsvsvalgqtaritcggnnigiknvhwyqqrpgqapvlviytdinrpsgiper
fsgsnsgntatliiskaqagdeadyfcqvwdsntvvfgggtkltvlsqpkaapsvtlfpp
sseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassylsl
tpeqwkshksyscqvthegstvektvaptec

    Sequence, based on observed residues (ATOM records): (download) 
    >6urmE (E:)
syeltqplsvsvalgqtaritcggnnigiknvhwyqqrpgqapvlviytdinrpsgiper
fsgsnsgntatliiskaqagdeadyfcqvwdsntvvfgggtkltvlsqpkaapsvtlfpp
sseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassylsl
tpeqwkshksyscqvthegstvektvapt

  • Chain 'F':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6urmH (H:)
qvtlresgpalvkptqtltltctfsgfslstsgmcltwirrppgkalewlalidwddnky
yntslrtrltiskdtsknqvvlkvtdmdpvdtgtyycarmlygdlggrfdpwgqgtlvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >6urmH (H:)
qvtlresgpalvkptqtltltctfsgfslstsgmcltwirrppgkalewlalidwddnky
yntslrtrltiskdtsknqvvlkvtdmdpvdtgtyycarmlygdlggrfdpwgqgtlvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6urmL (L:)
syeltqplsvsvalgqtaritcggnnigiknvhwyqqrpgqapvlviytdinrpsgiper
fsgsnsgntatliiskaqagdeadyfcqvwdsntvvfgggtkltvlsqpkaapsvtlfpp
sseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassylsl
tpeqwkshksyscqvthegstvektvaptec

    Sequence, based on observed residues (ATOM records): (download) 
    >6urmL (L:)
syeltqplsvsvalgqtaritcggnnigiknvhwyqqrpgqapvlviytdinrpsgiper
fsgsnsgntatliiskaqagdeadyfcqvwdsntvvfgggtkltvlsqpkaapsvtlfpp
sseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassylsl
tpeqwkshksyscqvthegstvektvapte