PDB entry 6urg

View 6urg on RCSB PDB site
Description: cryo-em structure of human cpsf160-wdr33-cpsf30-cpsf100 pim complex
Deposited on 2019-10-23, released 2019-11-27
The last revision was dated 2020-03-04, with a file datestamp of 2020-02-28.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cleavage and polyadenylation specificity factor subunit 1
    Species: Homo sapiens [TaxId:9606]
    Gene: CPSF1, CPSF160
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: pre-mRNA 3' end processing protein WDR33
    Species: Homo sapiens [TaxId:9606]
    Gene: WDR33, WDC146
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Cleavage and polyadenylation specificity factor subunit 4
    Species: Homo sapiens [TaxId:9606]
    Gene: CPSF4, CPSF30, NAR, NEB1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Cleavage and polyadenylation specificity factor subunit 2
    Species: Homo sapiens [TaxId:9606]
    Gene: CPSF2, CPSF100, KIAA1367
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6urgA (A:)
    myavykqahpptglefsmycnffnnsernlvvagtsqlyvyrlnrdaealtkndrstegk
    ahreklelaasfsffgnvmsmasvqlagakrdalllsfkdaklsvveydpgthdlktlsl
    hyfeepelrdgfvqnvhtprvrvdpdgrcaamlvygtrlvvlpfrreslaeeheglvgeg
    qrssflpsyiidvraldekllniidlqflhgyyeptllilfepnqtwpgrvavrqdtcsi
    vaislnitqkvhpviwsltslpfdctqalavpkpiggvvvfavnsllylnqsvppygval
    nslttgttafplrtqegvritldcaqatfisydkmvislkggeiyvltlitdgmrsvraf
    hfdkaaasvlttsmvtmepgylflgsrlgnslllkyteklqeppasavreaadkeeppsk
    kkrvdatagwsaagksvpqdevdeievygseaqsgtqlatysfevcdsilnigpcanaav
    gepaflseefqnspepdleivvcsghgkngalsvlqksirpqvvttfelpgcydmwtvia
    pvrkeeednpkgegteqepsttpeadddgrrhgflilsredstmilqtgqeimeldtsgf
    atqgptvfagnigdnryivqvsplgirllegvnqlhfipvdlgapivqcavadpyvvims
    aeghvtmfllksdsyggrhhrlalhkpplhhqskvitlclyrdlsgmfttesrlggarde
    lggrsgpeaeglgsetsptvddeeemlygdsgslfspskeearrssqppadrdpapfrae
    pthwcllvrengtmeiyqlpdwrlvflvknfpvgqrvlvdssfgqpttqgearreeatrq
    gelplvkevllvalgsrqsrpyllvhvdqelliyeafphdsqlgqgnlkvrfkkvphnin
    frekkpkpskkkaegggaeegagargrvarfryfediygysgvficgpsphwllvtgrga
    lrlhpmaidgpvdsfapfhnvncprgflyfnrqgelrisvlpaylsydapwpvrkiplrc
    tahyvayhveskvyavatstntpcariprmtgeekefetierderyihpqqeafsiqlis
    pvsweaipnarielqewehvtcmktvslrseetvsglkgyvaagtclmqgeevtcrgril
    imdvievvpepgqpltknkfkvlyekeqkgpvtalchcnghlvsaigqkiflwslrasel
    tgmafidtqlyihqmisvknfilaadvmksisllryqeesktlslvsrdakplevysvdf
    mvdnaqlgflvsdrdrnlmvymylpeakesfggmrllrradfhvgahvntfwrtpcrgat
    eglskksvvwenkhitwfatldggiglllpmqektyrrllmlqnalttmlphhaglnpra
    frmlhvdrrtlqnavrnvldgellnrylylstmerselakkigttpdiilddlletdrvt
    ahf
    

    Sequence, based on observed residues (ATOM records):
    >6urgA (A:)
    myavykqahpptglefsmycnffnnsernlvvagtsqlyvyrlnrdaeareklelaasfs
    ffgnvmsmasvqlagakrdalllsfkdaklsvveydpgthdlktlslhyfeepelrdgfv
    qnvhtprvrvdpdgrcaamlvygtrlvvlpfrssflpsyiidvraldekllniidlqflh
    gyyeptllilfepnqtwpgrvavrqdtcsivaislnitqkvhpviwsltslpfdctqala
    vpkpiggvvvfavnsllylnqsvppygvalnslttgttafplrtqegvritldcaqatfi
    sydkmvislkggeiyvltlitdgmrsvrafhfdkaaasvlttsmvtmepgylflgsrlgn
    slllkytekllatysfevcdsilnigpcanaavgepaflseefqnspepdleivvcsghg
    kngalsvlqksirpqvvttfelpgcydmwtviaprrhgflilsredstmilqtgqeimel
    dtsgfatqgptvfagnigdnryivqvsplgirllegvnqlhfipvdlgapivqcavadpy
    vvimsaeghvtmfllksdhhrlalhkpplhhqskvitlclyrdlsgmftteepthwcllv
    rengtmeiyqlpdwrlvflvknfpvgqrvlvdsslplvkevllvalgsrqsrpyllvhvd
    qelliyeafphdsqlgqgnlkvrfkkvphninfregrvarfryfediygysgvficgpsp
    hwllvtgrgalrlhpmaidgpvdsfapfhnvncprgflyfnrqgelrisvlpaylsydap
    wpvrkiplrctahyvayhveskvyavatstntpcariprmtgeekefetierderyihpq
    qeafsiqlispvsweaipnarielqewehvtcmktvslrseetvsglkgyvaagtclmqg
    eevtcrgrilimdvievvpepgqpltknkfkvlyekeqkgpvtalchcnghlvsaigqki
    flwslraseltgmafidtqlyihqmisvknfilaadvmksisllryqeesktlslvsrda
    kplevysvdfmvdnaqlgflvsdrdrnlmvymylpeakesfggmrllrradfhvgahvnt
    fwrtpcrvwenkhitwfatldggiglllpmqektyrrllmlqnalttmlphhaglnpraf
    rmlhvdrrtlqnavrnvldgellnrylylstmerselakkigttpdiilddlletdrvta
    hf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6urgB (B:)
    mgsshhhhhhssglvmateigspprffhmprfqhqaprqlfykrpdfaqqqamqqltfdg
    krmrkavnrktidynpsvikylenriwqrdqrdmraiqpdagyyndlvppigmlnnpmna
    vttkfvrtstnkvkcpvfvvrwtpegrrlvtgassgeftlwngltfnfetilqahdspvr
    amtwshndmwmltadhggyvkywqsnmnnvkmfqahkeaireasfsptdnkfatcsddgt
    vriwdflrcheerilrghgadvkcvdwhptkglvvsgskdsqqpikfwdpktgqslatlh
    ahkntvmevklnlngnwlltasrdhlcklfdirnlkeelqvfrghkkeatavawhpvheg
    lfasggsdgsllfwhvgvekevggmemahegmiwslawhplghilcsgsndhtskfwtrn
    rpgdkmrdrynlnllpgmsedgveyddlepnslavipgmgipeqlklameqeqmgkdesn
    eiemtipgldwgmeevmqkdqkkvpqkkvpyakpipaqfqqawmqnkvpipapnevlndr
    kedikleekkktqaeieqematlqytnpqlleqlkierlaqkqveqi
    

    Sequence, based on observed residues (ATOM records):
    >6urgB (B:)
    rktidynpsvikylenriwqrdqrdmraiqpdagyyndlvppigmlnnpmnavttkfvrt
    stnkvkcpvfvvrwtpegrrlvtgassgeftlwngltfnfetilqahdspvramtwshnd
    mwmltadhggyvkywqsnmnnvkmfqahkeaireasfsptdnkfatcsddgtvriwdflr
    cheerilrghgadvkcvdwhptkglvvsgskdsqqpikfwdpktgqslatlhahkntvme
    vklnlngnwlltasrdhlcklfdirnlkeelqvfrghkkeatavawhpvheglfasggsd
    gsllfwhvgvekevggmemahegmiwslawhplghilcsgsndhtskfwtrnrpgdkmrd
    rynlnl
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6urgC (C:)
    mqeiiasvdhikfdleiaveqqlgaqplpfpgmdksgaavcefflkaacgkggmcpfrhi
    sgektvvckhwlrglckkgdqceflheydmtkmpecyfyskfgecsnkecpflhidpesk
    ikdcpwydrgfckhgplcrhrhtrrvicvnylvgfcpegpsckfmhprfelpmgtteqpp
    lpqqtqppakqrtpqvigvmqsqnssagnrgprpleqvtcykcgekghyanrctkghlaf
    lsgqhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6urgC (C:)
    mqeiiasvdhikfdleiaveqqlgaqplpfpgmdksgaavcefflkaacgkggmcpfrhi
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6urgF (F:)
    mtsiiklttlsgvqeesalcyllqvdefrflldcgwdehfsmdiidslrkhvhqidavll
    shpdplhlgalpyavgklglncaiyatipvykmgqmfmydlyqsrhntedftlftlddvd
    aafdkiqqlkfsqivnlkgkghglsitplpaghmiggtiwkivkdgeeeivyavdfnhkr
    eihlngcslemlsrpsllitdsfnatyvqprrkqrdeqlltnvletlrgdgnvliavdta
    grvlelaqlldqiwrtkdaglgvyslallnnvsynvvefsksqvewmsdklmrcfedkrn
    npfqfrhlslchglsdlarvpspkvvlasqpdlecgfsrdlfiqwcqdpknsiiltyrtt
    pgtlarflidnpsekiteielrkrvklegkeleeylekeklkkeaakkleqskeadidss
    desdieedidqpsahktkhdlmmkgegsrkgsffkqakksypmfpapeerikwdeygeii
    kpedflvpelqateeeksklesgltngdepmdqdlsdvptkcisttesieikarvtyidy
    egrsdgdsikkiinqmkprqliivhgppeasqdlaeccrafggkdikvympklhetvdat
    sethiyqvrlkdslvsslqfckakdaelawidgvldmrvskvdtgvileegelkddgeds
    emqveapsdssviaqqkamkslfgddeketgeeseiiptleplpphevpghqsvfmnepr
    lsdfkqvllregiqaefvggvlvcnnqvavrrtetgriglegclcqdfyrirdllyeqya
    iv
    

    Sequence, based on observed residues (ATOM records):
    >6urgF (F:)
    khdlmsypmfpapeerikwdeygeiikpedfl