PDB entry 6urf

View 6urf on RCSB PDB site
Description: malic enzyme from mycobacterium tuberculosis
Deposited on 2019-10-23, released 2020-10-28
The last revision was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: XRAY
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NAD-dependent malic enzyme
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: mez, mez_2, DSI35_04950, ERS007657_00054, ERS007661_01303, ERS007665_00385, ERS007670_00245, ERS007672_00340, ERS007681_00703, ERS007703_00793, ERS007720_02108, ERS007722_00150, ERS007741_00458, ERS023446_00378, ERS024276_00123, ERS027644_00794, ERS027646_00126, ERS027651_00016, ERS027652_00738, ERS027654_00055, ERS027659_00902, ERS027661_00290, ERS027666_00475, ERS031537_00346, ERS124361_01639, FDK60_04380, SAMEA2682835_05736, SAMEA2682864_03296, SAMEA2683035_01163
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: NAD-dependent malic enzyme
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: mez, mez_2, DSI35_04950, ERS007657_00054, ERS007661_01303, ERS007665_00385, ERS007670_00245, ERS007672_00340, ERS007681_00703, ERS007703_00793, ERS007720_02108, ERS007722_00150, ERS007741_00458, ERS023446_00378, ERS024276_00123, ERS027644_00794, ERS027646_00126, ERS027651_00016, ERS027652_00738, ERS027654_00055, ERS027659_00902, ERS027661_00290, ERS027666_00475, ERS031537_00346, ERS124361_01639, FDK60_04380, SAMEA2682835_05736, SAMEA2682864_03296, SAMEA2683035_01163
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A045JP82 (22-End)
      • expression tag (18-21)
  • Chain 'C':
    Compound: NAD-dependent malic enzyme
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: mez, mez_2, DSI35_04950, ERS007657_00054, ERS007661_01303, ERS007665_00385, ERS007670_00245, ERS007672_00340, ERS007681_00703, ERS007703_00793, ERS007720_02108, ERS007722_00150, ERS007741_00458, ERS023446_00378, ERS024276_00123, ERS027644_00794, ERS027646_00126, ERS027651_00016, ERS027652_00738, ERS027654_00055, ERS027659_00902, ERS027661_00290, ERS027666_00475, ERS031537_00346, ERS124361_01639, FDK60_04380, SAMEA2682835_05736, SAMEA2682864_03296, SAMEA2683035_01163
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: NAD-dependent malic enzyme
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: mez, mez_2, DSI35_04950, ERS007657_00054, ERS007661_01303, ERS007665_00385, ERS007670_00245, ERS007672_00340, ERS007681_00703, ERS007703_00793, ERS007720_02108, ERS007722_00150, ERS007741_00458, ERS023446_00378, ERS024276_00123, ERS027644_00794, ERS027646_00126, ERS027651_00016, ERS027652_00738, ERS027654_00055, ERS027659_00902, ERS027661_00290, ERS027666_00475, ERS031537_00346, ERS124361_01639, FDK60_04380, SAMEA2682835_05736, SAMEA2682864_03296, SAMEA2683035_01163
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6urfA (A:)
mhhhhhhssgvdlgtenlyfqsmsdarvpripaalsapslnrgvgfthaqrrrlgltgrl
psavltldqqaervwhqlqslatelgrnllleqlhyrhevlyfkvladhlpelmpvvytp
tvgeaiqrfsdeyrgqrglflsidepdeieeafntlglgpedvdlivctdaeailgigdw
gvggiqiavgklalytagggvdprrclavsldvgtdneqlladpfylgnrharrrgreyd
efvsryietaqrlfprailhfedfgpanarkildtygtdycvfnddmqgtgavvlaavys
glkvtgiplrdqtivvfgagtagmgiadqirdamvadgatleqavsqiwpidrpgllfdd
mddlrdfqvpyaknrhqlgvavgdrvglsdaikiasptillgcstvygaftkevveamta
sckhpmifplsnptsrmeaipadvlawsngrallatgspvapvefdettyvigqannvla
fpgiglgvivagarlitrrmlhaaakaiahqanptnpgdsllpdvqnlraisttvaeavy
raavqdgvasrthddvrqaivdtmwlpayd

    Sequence, based on observed residues (ATOM records):
    >6urfA (A:)
paalsapslnrgvgfthaqrrrlgltgrlpsavltldqqaervwhqlqslatelgrnlll
eqlhyrhevlyfkvladhlpelmpvvytptvgeaiqrfsdeyrgqrglflsidepdeiee
afntlglgpedvdlivctdaeailgigdwgvggiqiavgklalytagggvdprrclavsl
dvgtdneqlladpfylgnrharrrgreydefvsryietaqrlfprailhfedfgpanark
ildtygtdycvfnddmqgtgavvlaavysglkvtgiplrdqtivvfgagtagmgiadqir
damvadgatleqavsqiwpidrpgllfddmddlrdfqvpyglsdaikiasptillgcstv
ygaftkevveamtasckhpmifplsnptsrmeaipadvlawsngrallatgspvapvefd
ettyvigqannvlafpgiglgvivagarlitrrmlhaaakaiahqanpgdsllpdvqnlr
aisttvaeavyraavqdgvasrthddvrqaivdtmwlpay

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6urfB (B:)
mhhhhhhssgvdlgtenlyfqsmsdarvpripaalsapslnrgvgfthaqrrrlgltgrl
psavltldqqaervwhqlqslatelgrnllleqlhyrhevlyfkvladhlpelmpvvytp
tvgeaiqrfsdeyrgqrglflsidepdeieeafntlglgpedvdlivctdaeailgigdw
gvggiqiavgklalytagggvdprrclavsldvgtdneqlladpfylgnrharrrgreyd
efvsryietaqrlfprailhfedfgpanarkildtygtdycvfnddmqgtgavvlaavys
glkvtgiplrdqtivvfgagtagmgiadqirdamvadgatleqavsqiwpidrpgllfdd
mddlrdfqvpyaknrhqlgvavgdrvglsdaikiasptillgcstvygaftkevveamta
sckhpmifplsnptsrmeaipadvlawsngrallatgspvapvefdettyvigqannvla
fpgiglgvivagarlitrrmlhaaakaiahqanptnpgdsllpdvqnlraisttvaeavy
raavqdgvasrthddvrqaivdtmwlpayd

    Sequence, based on observed residues (ATOM records):
    >6urfB (B:)
yfqsmsdarvpripaalsapslnrgvgfthaqrrrlgltgrlpsavltldqqaervwhql
qslatelgrnllleqlhyrhevlyfkvladhlpelmpvvytptvgeaiqrfsdeyrgqrg
lflsidepdeieeafntlgpedvdlivctdaeailgigdwgvggiqiavgklalytaggg
vdprrclavsldvgtdneqlladpfylgnrharrrgreydefvsryietaqrlfprailh
fedfgpanarkildtygtdycvfnddmqgtgavvlaavysglkvtgiplrdqtivvfgag
tagmgiadqirdamvadgatleqavsqiwpidrpgllfikiasptillgcstvygaevve
amtasckhpmifplsnptsrmeaipadvlawsnallatgspvapvetyvigqannvlafp
giglgvivagarlrrmlhaaakaiahqanptnpgdsllpdvqnlraisttvaeavyraav
qdgvasrthddvrqai

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6urfC (C:)
mhhhhhhssgvdlgtenlyfqsmsdarvpripaalsapslnrgvgfthaqrrrlgltgrl
psavltldqqaervwhqlqslatelgrnllleqlhyrhevlyfkvladhlpelmpvvytp
tvgeaiqrfsdeyrgqrglflsidepdeieeafntlglgpedvdlivctdaeailgigdw
gvggiqiavgklalytagggvdprrclavsldvgtdneqlladpfylgnrharrrgreyd
efvsryietaqrlfprailhfedfgpanarkildtygtdycvfnddmqgtgavvlaavys
glkvtgiplrdqtivvfgagtagmgiadqirdamvadgatleqavsqiwpidrpgllfdd
mddlrdfqvpyaknrhqlgvavgdrvglsdaikiasptillgcstvygaftkevveamta
sckhpmifplsnptsrmeaipadvlawsngrallatgspvapvefdettyvigqannvla
fpgiglgvivagarlitrrmlhaaakaiahqanptnpgdsllpdvqnlraisttvaeavy
raavqdgvasrthddvrqaivdtmwlpayd

    Sequence, based on observed residues (ATOM records):
    >6urfC (C:)
vpripaalsapslnrgvgfthaqrrrlgltgrlpsavltldqqaervwhqlqslatelgr
nllleqlhyrhevlyfkvladhlpelmpvvytptvgeaiqrfsdeyrgqrglflsidpde
ieeafntlglgdlivctdaeailgigdwgvggiqiavgklalytagggvdprrclavsld
vgtdneqlladpfylgnrharrrgreydefvsryietaqrlfprilhfedfgpanarkil
dtygtdycvfnddmqgtgavvlaavysglkvtgiplrdqtivvagtagmgiadqirdamv
adgatleqavsqiwpidddmddlrdfqgdrvgaikiaspillgcygaftkevveamtasc
khpmifplsnptsrmeaipadvlawsngrallatgspvapvefdttyvigqannvlafpg
iglgvivagarlitrrmlhaaakaiahqanptnpgdsllpdvqnlraisttvaeavyraa
vqdgvasrthddvrqaivdtmwlpayd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6urfD (D:)
mhhhhhhssgvdlgtenlyfqsmsdarvpripaalsapslnrgvgfthaqrrrlgltgrl
psavltldqqaervwhqlqslatelgrnllleqlhyrhevlyfkvladhlpelmpvvytp
tvgeaiqrfsdeyrgqrglflsidepdeieeafntlglgpedvdlivctdaeailgigdw
gvggiqiavgklalytagggvdprrclavsldvgtdneqlladpfylgnrharrrgreyd
efvsryietaqrlfprailhfedfgpanarkildtygtdycvfnddmqgtgavvlaavys
glkvtgiplrdqtivvfgagtagmgiadqirdamvadgatleqavsqiwpidrpgllfdd
mddlrdfqvpyaknrhqlgvavgdrvglsdaikiasptillgcstvygaftkevveamta
sckhpmifplsnptsrmeaipadvlawsngrallatgspvapvefdettyvigqannvla
fpgiglgvivagarlitrrmlhaaakaiahqanptnpgdsllpdvqnlraisttvaeavy
raavqdgvasrthddvrqaivdtmwlpayd

    Sequence, based on observed residues (ATOM records):
    >6urfD (D:)
vpripaalsapslnrgvgfthaqrrrlgltgrlpsavltldqqaervwhqlqslatelgr
nllleqlhyrhevlyfkvladhlpelmpvvytptvgeaiqrfsdeyrgqrglflsidepd
eieeafntlglgpedvdlivctdaeailgigdwgvggiqiavgklalytagggvdprrcl
avsldvgtdneqlladpfylgnrharrrgreydefvsryietaqrlfprailhfedfgpa
narkildtygtdycvfnddmqgtgavvlaavysglkvtgiplrdqtivvfgagtagmgia
dqirdamvadgatleqavsqiwpidrllfddmddlrdfqvpyavglsdaikiasptillg
cstvygaftkevveamtasckhpmifplsnptsrmeaipadvlawsngrallatgspvap
vefdettyvigqannvlafpgiglgvivagarlitrrmlhaaakaiahqanptnpgdsll
pdvqnlraisttvaeavyraavqdgvasrthddvrqaivdtmwlpa