PDB entry 6uph

View 6uph on RCSB PDB site
Description: Structure of a Yeast Centromeric Nucleosome at 2.7 Angstrom resolution
Class: cell cycle
Keywords: Histones, Nucleosome, Centromere, Kinetochore, Yeast, CELL CYCLE
Deposited on 2019-10-17, released 2019-11-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: EM
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3-like centromeric protein cse4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: CSE4, CSL2, YKL049C, YKL262
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6upha_
  • Chain 'B':
    Compound: histone h4
    Species: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) [TaxId:284590]
    Gene: KLLA0_E08647g, KLLA0_E17601g
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uphb_
  • Chain 'C':
    Compound: histone h2a
    Species: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) [TaxId:284590]
    Gene: HTA1, KLLA0E17413g, HTA2, KLLA0F13332g
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uphc_
  • Chain 'D':
    Compound: Histone H2B.1
    Species: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) [TaxId:284590]
    Gene: HTB1, KLLA0F13310g
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uphd_
  • Chain 'E':
    Compound: histone h3-like centromeric protein cse4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: CSE4, CSL2, YKL049C, YKL262
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uphe_
  • Chain 'F':
    Compound: histone h4
    Species: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) [TaxId:284590]
    Gene: KLLA0_E08647g, KLLA0_E17601g
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uphf_
  • Chain 'G':
    Compound: histone h2a
    Species: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) [TaxId:284590]
    Gene: HTA1, KLLA0E17413g, HTA2, KLLA0F13332g
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uphg_
  • Chain 'H':
    Compound: Histone H2B.1
    Species: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) [TaxId:284590]
    Gene: HTB1, KLLA0F13310g
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uphh_
  • Chain 'I':
    Compound: DNA (119-mer)
    Species: unidentified [TaxId:32644]
  • Chain 'J':
    Compound: DNA (119-mer)
    Species: unidentified [TaxId:32644]

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6uphA (A:)
msskqqwvssaiqsdssgrslsnvnrlagdqqsindralsllqrtratknlfprreerrr
yessksdldietdyedqagnleieteneeeaemetevpapvrthsyaldryvrqkrrekq
rkqslkrvekkytpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrwqs
maimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqfi

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphA (A:)
elalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrwqsmaimalqeaseaylv
gllehtnllalhakritimkkdmqlarrirgqf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6uphB (B:)
hhhhhhenlyfqsnamsgrgkggkglgkggakrhrkilrdniqgitkpairrlarrggvk
risgliyeevrnvlktflesvirdavtytehakrktvtsldvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphB (B:)
dniqgitkpairrlarrggvkrisgliyeevrnvlktflesvirdavtytehakrktvts
ldvvyalkrqgrtlygfgg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6uphC (C:)
hhhhhhenlyfqsnamsgkggkagsaakasqsrsakagltfpvgrvhrllrkgnyaqrig
sgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaq
ggvlpnihqnllpkksskakasqel

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphC (C:)
srsakagltfpvgrvhrllrkgnyaqrigsgapvyltavleylaaeilelagnaardnkk
triiprhlqlairnddelnkllgnvtiaqggvlpnih

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6uphD (D:)
hhhhhhenlyfqsnamsakaskapaskapaekkpaakktssstdpskkrtkarketyssy
iykvlkqthpdtgisqksmsilnsfvndiferiatessklaaynkkstisareiqtavrl
ilpgelakhavsegtravtkyssstqa

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphD (D:)
rtkarketyssyiykvlkqthpdtgisqksmsilnsfvndiferiatessklaaynkkst
isareiqtavrlilpgelakhavsegtravtkysss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6uphE (E:)
msskqqwvssaiqsdssgrslsnvnrlagdqqsindralsllqrtratknlfprreerrr
yessksdldietdyedqagnleieteneeeaemetevpapvrthsyaldryvrqkrrekq
rkqslkrvekkytpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrwqs
maimalqeaseaylvgllehtnllalhakritimkkdmqlarrirgqfi

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphE (E:)
tpselalyeirkyqrstdlliskipfarlvkevtdefttkdqdlrwqsmaimalqeasea
ylvgllehtnllalhakritimkkdmqlarrirgqfi

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6uphF (F:)
hhhhhhenlyfqsnamsgrgkggkglgkggakrhrkilrdniqgitkpairrlarrggvk
risgliyeevrnvlktflesvirdavtytehakrktvtsldvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphF (F:)
dniqgitkpairrlarrggvkrisgliyeevrnvlktflesvirdavtytehakrktvts
ldvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6uphG (G:)
hhhhhhenlyfqsnamsgkggkagsaakasqsrsakagltfpvgrvhrllrkgnyaqrig
sgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaq
ggvlpnihqnllpkksskakasqel

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphG (G:)
qsrsakagltfpvgrvhrllrkgnyaqrigsgapvyltavleylaaeilelagnaardnk
ktriiprhlqlairnddelnkllgnvtiaqggvlpnihq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6uphH (H:)
hhhhhhenlyfqsnamsakaskapaskapaekkpaakktssstdpskkrtkarketyssy
iykvlkqthpdtgisqksmsilnsfvndiferiatessklaaynkkstisareiqtavrl
ilpgelakhavsegtravtkyssstqa

    Sequence, based on observed residues (ATOM records): (download) 
    >6uphH (H:)
rketyssyiykvlkqthpdtgisqksmsilnsfvndiferiatessklaaynkkstisar
eiqtavrlilpgelakhavsegtravtkysss

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.