PDB entry 6um1

View 6um1 on RCSB PDB site
Description: structure of m-6-p/igfii receptor at ph 4.5
Deposited on 2019-10-08, released 2020-02-26
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: EM
Resolution: 3.46 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cation-independent mannose-6-phosphate receptor
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6um1A (A:)
    meaaagrsshlgpapagrpprcplllqlqllllllllppgwvpgaagtqgaefpelcsyt
    weavdtknnmlykinicgnmgvaqcgpssavcmhdlktdsfhsvgdsllktasrsllefn
    ttvnckqqnhkiqssitflcgktlgtpefvtatdcvhyfewrttaackknifkankevpc
    yafdrelkkhdlnpliktsgaylvddsdpdtslfinvcrdievlrasspqvrvcptgaaa
    clvrgdrafdvgrpqeglklvsndrlvlsyvkegagqpdfcdghspavtitfvcpserre
    gtipkltaksncrfeiewvteyachrdylesrscslssaqhdvavdlqplsrveasdslf
    ytseadeytyylsicggsqapicnkkdaavcqvkkadstqvkvagrpqnltlrysdgdlt
    liyfggeecssgfqrmsvinfecnqtagnngrgapvftgevdctyfftwdtkyacvheke
    allcgvsdgkqrfdlsalarhseleqnweavdgsqreaekkhffinichrvlqtgqargc
    pedaavcavdkngsknlgrfissptrekgniqlsysdgdecgggqkiitnitlmckpgdl
    esapvlttsradgcfyefewrtaaacvlsrtegdnctvfdsqagfsfdltpltkkdaykv
    etdkyefhinvcgpvsvgacppdsgacqvsrsdrkswnlgrsnaklsyydgmiqltyrdg
    tpynnekrtpratlitflcdrdagvgfpeyqeednstynfrwytsyacpeeplecivtdp
    vtldqydlsrlakseggpggnwysldnggarstwrkyyinvcrplnpvpgcdryasacqm
    kyqgeqgsysetvsisnlgvaktgpmvedsgsllleyvngsacttsdqrrttyttrihlv
    cstgslythpifslnwecvvsflwntaaacpirittdidqvcsikdpnsgyvfdlnplnn
    srgyvvlgigktflfnvcgdmpacgtldgkpasgceaevqmddmktlkpgrlvglekslq
    lstegfitlnytglpshpngradafiirfvcnddvypgtpkflhqdidsslgirdtffef
    etalacvpspvdcqvtdpagneydlsglskarkpwtavdtfdegkkrtfylsvctplpyi
    pgchgtavgcclvtedsklnlgvvqispqvgangslslvyvngdkcknqrfstrinleca
    httgsptfqlqndceyvflwrtveacpvvraegdycevrdprhgnlynliplglndtvvr
    ageytyyfrvcgeltsgvcptsdkskvisscqekrgpqgfqkvaglfnqkltyengvlkm
    nytggdtchkvyqrsttiffycdrstqapvflqetsdcsylfewrtqyacppydltecsf
    kneagetydlsslsrysdnweavtgtgstehylinvckslspqagsdpcppeaavcllgg
    pkpvnlgrvrdspqwsqgltllkyvdgdlcpdqirkksttirftcseshvnsrpmfisav
    edceytfswptaaacavksnvhddcqvtnpatghlfdlsslsgragftaaysekglvyls
    vcgdnencangvgacfgqtrisvgkaskrltyvdqvlqlvyeggspcpsktglsyksvis
    fvcrpevgptnrpmlisldkrtctlffswhtplaceqttecsvrngsslidlsplihrtg
    gyeaydeseddgsdtspdfyinicqplnpmhglacpagtavckvpvdgppidigrvagpp
    ilnpianevylnfesstpcladrhfnytslitfhckrgvsmgtpkllrtsvcdfvfewet
    plvcpdevktdgcsltdeqlyysfnlsslskstfkvtrgphtysvgvctaaagldeggck
    dgavcllsgskgasfgrlasmkldyrhqdeavilsyangdtcppetedgepcvfpfvfng
    ksyeecvvesrarlwcattanydrdhewgfckhstshrtsviifkcdedadvgrpqvfse
    vrgcevtfewktkvvcppkkmeckfvqkhrtydlrllssltgswsfvhngasyyinlcqk
    iykgpqdcserasvckkstsgevqvlglvhtqkldvvddrvivtyskghycgdnktasav
    ieltcaktvgrpsftrfdvdsctyhfswdsraacavkpqevqmvngtitnpangrsfslg
    diyfkrfsasgdvrtngdryiyeiqlssitgssspacsgasicqrkandqhfsrkvgtsn
    qtryyvqdgdldvvftssskcgkdktksvsstiffhcdplvkdgipefshetadcqylfs
    whtsavcplgagfdeeiagddaqehkglsersqavgavlslllvaltaclltlllykker
    remvmsrltnccrrsanvsykyskvnkeeeadenetewlmeeiqppaprpgkegqenghv
    aaksvraadtlsalhgdeqdsedevltlpevkvrppgrapgaeggpplrplprkappplr
    addrvglvrgeparrgrpraaatpistfhddsdedllhv
    

    Sequence, based on observed residues (ATOM records):
    >6um1A (A:)
    aefpelcsytweavdtknnmlykinicgnmgvaqcgpssavcmhdlktdsfhsvgdsllk
    tasrsllefnttvnckqqnhkiqssitflcgktlgtpefvtatdcvhyfewrttaackkn
    ifkankevpcyafdrelkkhdlnpliktsgaylvddsdpdtslfinvcrdievlrasspq
    vrvcptgaaaclvrgdrafdvgrpqeglklvsndrlvlsyvkegagqpdfcdghspavti
    tfvcpserregtipkltaksncrfeiewvteyachrdylesrscslssaqhdvavdlqpl
    srveasdslfytseadeytyylsicggsqapicnkkdaavcqvkkadstqvkvagrpqnl
    tlrysdgdltliyfggeecssgfqrmsvinfecnqtagnngrgapvftgevdctyfftwd
    tkyacvhekeallcgvsdgkqrfdlsalarhseleqnweavdgsqreaekkhffinichr
    vlqtgqargcpedaavcavdkngsknlgrfissptrekgniqlsysdgdecgggqkiitn
    itlmckpgdlesapvlttsradgcfyefewrtaaacvlsrtegdnctvfdsqagfsfdlt
    pltkkdaykvetdkyefhinvcgpvsvgacppdsgacqvsrsdrkswnlgrsnaklsyyd
    gmiqltyrdgtpynnekrtpratlitflcdrdagvgfpeyqeednstynfrwytsyacpe
    eplecivtdpvtldqydlsrlakseggpggnwysldnggarstwrkyyinvcrplnpvpg
    cdryasacqmkyqgeqgsysetvsisnlgvaktgpmvedsgsllleyvngsacttsdqrr
    ttyttrihlvcstgslythpifslnwecvvsflwntaaacpirittdidqvcsikdpnsg
    yvfdlnplnnsrgyvvlgigktflfnvcgdmpacgtldgkpasgceaerlvglekslqls
    tegfitlnytglpshpngradafiirfvcnddvypgtpkflhqdidsslgirdtffefet
    alacvpspvdcqvtdpagneydlsglskarkpwtavdtfdegkkrtfylsvctplpyipg
    chgtavgcclvtedsklnlgvvqispqvgangslslvyvngdkcknqrfstrinlecaht
    tgsptfqlqndceyvflwrtveacpvvraegdycevrdprhgnlynliplglndtvvrag
    eytyyfrvcgeltsgvcptsdkskvisscqekrgpqgfqkvaglfnqkltyengvlkmny
    tggdtchkvyqrsttiffycdrstqapvflqetsdcsylfewrtqyacppydltecsfkn
    eagetydlsslsrysdnweavtgtgstehylinvckslspqagsdpcppeaavcllggpk
    pvnlgrvrdspqwsqgltllkyvdgdlcpdqirkksttirftcseshvnsrpmfisaved
    ceytfswptaaacavksnvhddcqvtnpatghlfdlsslsgragftaaysekglvylsvc
    gdnencangvgacfgqtrisvgkaskrltyvdqvlqlvyeggspcpsktglsyksvisfv
    crpevgptnrpmlisldkrtctlffswhtplaceqttecsvrngsslidlsplihrtggy
    eaydeseddgsdtspdfyinicqplnpmhglacpagtavckvpvdgppidigrvagppil
    npianevylnfesstpcladrhfnytslitfhckrgvsmgtpkllrtsvcdfvfewetpl
    vcpdevktdgcsslskstfkvtrgphtysvgvctaaagldeggckdgavcllsgskgasf
    grlasmkldyrhqdeavilsyangdtcppetedgepcvfpfvfngksyeecvvesrarlw
    cattanydrdhewgfckhstshrtsviifkcdedadvgrpqvfsevrgcevtfewktkvv
    cppkkmeckfvqkhrtydlrllssltgswsfvhngasyyinlcqkiykgpqdcserasvc
    kkstsgevqvlglvhtqkldvvddrvivtyskghycgdnktasavieltcaktvgrpsft
    rfdvdsctyhfswdsraacmvngtitnpangrsfslgdiyfkrfsasgdvrtngdryiye
    iqlssitgssspacsgasicqrkandqhfsrkvgtsnqtryyvqdgdldvvftssskcgk
    dktksvsstiffhcdplvkdgipefshetadcqylfswhtsavcplga