PDB entry 6uk2

View 6uk2 on RCSB PDB site
Description: complex of t cell receptor with hhat wild type peptide kqwlvwlll presented by hla-a206
Deposited on 2019-10-04, released 2020-08-19
The last revision was dated 2020-10-28, with a file datestamp of 2020-10-23.
Experiment type: XRAY
Resolution: 3.14 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
  • Chain 'C':
    Compound: Protein-cysteine N-palmitoyltransferase HHAT
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 302 TIL T cell receptor alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UK2
  • Chain 'E':
    Compound: 302 TIL T cell receptor beta chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UK2 (Start-244)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6uk2A (A:)
mgshsmryfytsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpey
wdgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyayd
gkdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketl
qrtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdg
tfqkwaavvvpsgqeqrytchvqheglpkpltlrwe

    Sequence, based on observed residues (ATOM records):
    >6uk2A (A:)
gshsmryfytsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6uk2B (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6uk2C (C:)
kqwlvwlll

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6uk2D (D:)
maqtvtqsqpemsvqeaetvtlsctydtsesdyylfwykqppsrqmilvirqeaykqqna
tenrfsvnfqkaaksfslkisdsqlgdaamyfcafmdsnyqliwgagtkliikpniqnpd
pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
nksdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records):
    >6uk2D (D:)
qtvtqsqpemsvqeaetvtlsctydtsesdyylfwykqppsrqmilvirqeaykqqnate
nrfsvnfqkaaksfslkisdsqlgdaamyfcafmdsnyqliwgagtkliikpniqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
sdfacanafnnsiipedtffps

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6uk2E (E:)
mdagviqsprhevtemgqevtlrckpisghnslfwyrqtmmrglelliyfnnnvpiddsg
mpedrfsakmpnasfstlkiqpseprdsavyfcassrtsptdtqyfgpgtrltvledlkn
vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
qpalndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaea
wgrad

    Sequence, based on observed residues (ATOM records):
    >6uk2E (E:)
dagviqsprhevtemgqevtlrckpisghnslfwyrqtmmrglelliyfnnnvpiddsgm
pedrfsakmpnasfstlkiqpseprdsavyfcassrtsptdtqyfgpgtrltvledlknv
fppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeq
palndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
grad