PDB entry 6ug9

View 6ug9 on RCSB PDB site
Description: Complex of ch28/11 Fab and SSEA-4 (hexagonal form)
Class: immune system
Keywords: immunoglobulin, chimeric antibody, antigen binding fragment, ssea-4, complex, immune system
Deposited on 2019-09-26, released 2019-12-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.74 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ch28/11 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UG9 (0-217)
    Domains in SCOPe 2.08: d6ug9a_
  • Chain 'B':
    Compound: ch28/11 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UG9 (0-End)
    Domains in SCOPe 2.08: d6ug9b1, d6ug9b2
  • Chain 'H':
    Compound: ch28/11 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UG9 (0-217)
    Domains in SCOPe 2.08: d6ug9h_
  • Chain 'J':
    Compound: ch28/11 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UG9 (0-217)
    Domains in SCOPe 2.08: d6ug9j_
  • Chain 'K':
    Compound: ch28/11 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UG9 (0-End)
    Domains in SCOPe 2.08: d6ug9k1, d6ug9k2
  • Chain 'L':
    Compound: ch28/11 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UG9 (0-End)
    Domains in SCOPe 2.08: d6ug9l1, d6ug9l2
  • Heterogens: BGC, GAL, GLA, NGA, SIA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ug9A (A:)
qvqlkesgpglvapsqslsitctvsgfslnsygvswvrqppgkglewlgviwgdgstnyh
salmsrlriskdnskrqvflklnslqtddtatyyctkpgsgyafaywgqgtlvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepa

    Sequence, based on observed residues (ATOM records): (download) 
    >6ug9A (A:)
qvqlkesgpglvapsqslsitctvsgfslnsygvswvrqppgkglewlgviwgdgstnyh
salmsrlriskdnskrqvflklnslqtddtatyyctkpgsgyafaywgqgtlvtvssast
kgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssvv
tvpssslgtqtyicnvnhkpsntkvdkkvepa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ug9B (B:)
envltqspaimsaspgekvtmtcsasssvnymhwyqqksstspklwiydtsklasgvpgr
fsgsgsgnsysltirtmeaedvatyfcfqasgypltfgggtklelkrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6ug9B (B:)
envltqspaimsaspgekvtmtcsasssvnymhwyqqksstspklwiydtsklasgvpgr
fsgsgsgnsysltirtmeaedvatyfcfqasgypltfgggtklelkrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6ug9H (H:)
qvqlkesgpglvapsqslsitctvsgfslnsygvswvrqppgkglewlgviwgdgstnyh
salmsrlriskdnskrqvflklnslqtddtatyyctkpgsgyafaywgqgtlvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepa

    Sequence, based on observed residues (ATOM records): (download) 
    >6ug9H (H:)
qvqlkesgpglvapsqslsitctvsgfslnsygvswvrqppgkglewlgviwgdgstnyh
salmsrlriskdnskrqvflklnslqtddtatyyctkpgsgyafaywgqgtlvtvssast
kgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssvv
tvpssslgtqtyicnvnhkpsntkvdkkvepa

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >6ug9J (J:)
qvqlkesgpglvapsqslsitctvsgfslnsygvswvrqppgkglewlgviwgdgstnyh
salmsrlriskdnskrqvflklnslqtddtatyyctkpgsgyafaywgqgtlvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepa

    Sequence, based on observed residues (ATOM records): (download) 
    >6ug9J (J:)
qvqlkesgpglvapsqslsitctvsgfslnsygvswvrqppgkglewlgviwgdgstnyh
salmsrlriskdnskrqvflklnslqtddtatyyctkpgsgyafaywgqgtlvtvssast
kgpsvfplapsstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkkvepa

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >6ug9K (K:)
envltqspaimsaspgekvtmtcsasssvnymhwyqqksstspklwiydtsklasgvpgr
fsgsgsgnsysltirtmeaedvatyfcfqasgypltfgggtklelkrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6ug9K (K:)
envltqspaimsaspgekvtmtcsasssvnymhwyqqksstspklwiydtsklasgvpgr
fsgsgsgnsysltirtmeaedvatyfcfqasgypltfgggtklelkrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrg

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6ug9L (L:)
envltqspaimsaspgekvtmtcsasssvnymhwyqqksstspklwiydtsklasgvpgr
fsgsgsgnsysltirtmeaedvatyfcfqasgypltfgggtklelkrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6ug9L (L:)
envltqspaimsaspgekvtmtcsasssvnymhwyqqksstspklwiydtsklasgvpgr
fsgsgsgnsysltirtmeaedvatyfcfqasgypltfgggtklelkrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrg