PDB entry 6ufo

View 6ufo on RCSB PDB site
Description: crystal structure of danio rerio histone deacetylase 10 in complex with 7-[(3-aminopropyl)amino]-1-methoxyheptan-2-one
Deposited on 2019-09-24, released 2019-12-04
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 2.68 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polyamine deacetylase HDAC10
    Species: Danio rerio [TaxId:7955]
    Gene: hdac10
    Database cross-references and differences (RAF-indexed):
    • Uniprot F1QCV2 (1-674)
      • expression tag (0)
      • conflict (153)
      • conflict (547)
      • conflict (585)
      • conflict (592)
      • conflict (595)
      • conflict (612)
      • conflict (645)
      • expression tag (675)
  • Heterogens: Q6P, ZN, PO4, K, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ufoA (A:)
aasgsalifdeemsrykllwtdpaceievperltvsyealrthglaqrckavpvrqateq
eillahseeyleavkqtpgmnveelmafskkyndvyfhqniyhcaklaagatlqlvdsvm
krevrngmalvrppghhsqrsaangfcvfnnvafaalyakknynlnrilivdwdvhhgqg
iqycfeedpsvlyfswhryehqsfwpnlpesdyssvgkgkgsgfninlpwnkvgmtnsdy
laaffhvllpvayefdpelvivsagfdsaigdpegemcalpeifahlthllmplaagkmc
vvleggynltslgqsvcqtvhsllgdptprisglgtacdsalesiqnvrnvqssywssfk
hlaqsetnpkrprldatnggpkessepasesnpkktaqdivwpeplkrmpasvrtvvvpp
pgveltlpkncqhsgdisestakevqrirdkhfhdltdqnilrslgniisvldrmmrsde
vcngcvvvsdlsvsvqcalqhaltepaervlvvyvgdgelpvktndgkvflvqictkete
dkcvnrltlclregesltagfmqallglilpvayefnpalvlgiveetaaktrlmrvwgh
mtcliqglargrmltllqgydkdlleltvsalsgasisplgplrapkpedvemmekqrqr
lqerwgllrctvsesw

    Sequence, based on observed residues (ATOM records):
    >6ufoA (A:)
aasgsalifdeemsrykllwtdpaceievperltvsyealrthglaqrckavpvrqateq
eillahseeyleavkqtpgmnveelmafskkyndvyfhqniyhcaklaagatlqlvdsvm
krevrngmalvrppghhsqrsaangfcvfnnvafaalyakknynlnrilivdwdvhhgqg
iqycfeedpsvlyfswhryehqsfwpnlpesdyssvgkgkgsgfninlpwnkvgmtnsdy
laaffhvllpvayefdpelvivsagfdsaigdpegemcalpeifahlthllmplaagkmc
vvleggynltslgqsvcqtvhsllgdptprisglgtacdsalesiqnvrnvqssywssfk
hlaqsetdivwpeplkrmpasvrtvvvpppgveltlpkncqhsdisestakevqrirdkh
fhdltdqnilrslgniisvldrmmrsdevcngcvvvsdlsvsvqcalqhaltepervlvv
yvgdgelpvktndgkvflvqictketedkcvnrltlclrgesltagfmqallglilpvay
efnpalvlgiveetarlmrvwghmtcliqglargrmltllqgydkdlleltvsalsgasi
splgplrapkpedvemmekqrqrlqerwgllrctvsesw