PDB entry 6ude

View 6ude on RCSB PDB site
Description: Crystal structure of Glycerol kinase from Elizabethkingia anophelis NUHP1 in complex with ADP and glycerol
Class: transferase
Keywords: SSGCID, Structural Genomics, Elizabethkingia anophelis, glycerol, adenosine diphosphate, ADP, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on 2019-09-19, released 2019-10-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol kinase
    Species: Elizabethkingia anophelis NUHP1 [TaxId:1338011]
    Gene: glpK, BD94_2504
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6udea1, d6udea2
  • Chain 'B':
    Compound: glycerol kinase
    Species: Elizabethkingia anophelis NUHP1 [TaxId:1338011]
    Gene: glpK, BD94_2504
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6udeb1, d6udeb2
  • Chain 'C':
    Compound: glycerol kinase
    Species: Elizabethkingia anophelis NUHP1 [TaxId:1338011]
    Gene: glpK, BD94_2504
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6udec1, d6udec2
  • Chain 'D':
    Compound: glycerol kinase
    Species: Elizabethkingia anophelis NUHP1 [TaxId:1338011]
    Gene: glpK, BD94_2504
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6uded1, d6uded2
  • Heterogens: ADP, GOL, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6udeA (A:)
mahhhhhhmmneklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpne
iwssqisvaaeviakagisglevaaigitnqrettvvwdrhtsepiynaivwqdrrtsky
cdelksqghtdeikqktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliw
kltrgkmfitdvsnasrtmmfnirtmdwdddllklfniprailpevkqssevygetsttl
fstkipiagiagdqqaalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvaw
kingevsyalegsvfvggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglg
apywdqyargtiigvtrgttdghiaratlegiafqvydivkameadaetqstelrvdgga
sasnllmqiqsdlfgfkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftp
kedktkidnmvsfwhkavkrsqawied

    Sequence, based on observed residues (ATOM records): (download) 
    >6udeA (A:)
eklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpneiwssqisvaae
viakaglevaaigitnqrettvvwdrhtsepiynaivwqdrrtskycdelksqghtdeik
qktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliwkltrgkmfitdvsn
asrtmmfnirtmdwdddllklfniprailpevkqssevygetsttlfstkipiagiagdq
qaalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvawkingevsyalegsv
fvggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglgapywdqyargtiig
vtrgttdghiaratlegiafqvydivkameadaetqstelrvdggasasnllmqiqsdlf
gfkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftpkedktkidnmvsfw
hkavkrsqawied

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6udeB (B:)
mahhhhhhmmneklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpne
iwssqisvaaeviakagisglevaaigitnqrettvvwdrhtsepiynaivwqdrrtsky
cdelksqghtdeikqktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliw
kltrgkmfitdvsnasrtmmfnirtmdwdddllklfniprailpevkqssevygetsttl
fstkipiagiagdqqaalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvaw
kingevsyalegsvfvggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglg
apywdqyargtiigvtrgttdghiaratlegiafqvydivkameadaetqstelrvdgga
sasnllmqiqsdlfgfkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftp
kedktkidnmvsfwhkavkrsqawied

    Sequence, based on observed residues (ATOM records): (download) 
    >6udeB (B:)
neklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpneiwssqisvaa
eviakagisglevaaigitnqrettvvwdrhtsepiynaivwqdrrtskycdelksqght
deikqktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliwkltrgkmfit
dvsnasrtmmfnirtmdwdddllklfniprailpevkqssevygetsttstkipiagiag
dqqaalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvawkingevsyaleg
svfvggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglgapywdqyargti
igvtrgttdghiaratlegiafqvydivkameadaetqstelrvdggasasnllmqiqsd
lfgfkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftpkedktkidnmvs
fwhkavkrsqawied

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6udeC (C:)
mahhhhhhmmneklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpne
iwssqisvaaeviakagisglevaaigitnqrettvvwdrhtsepiynaivwqdrrtsky
cdelksqghtdeikqktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliw
kltrgkmfitdvsnasrtmmfnirtmdwdddllklfniprailpevkqssevygetsttl
fstkipiagiagdqqaalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvaw
kingevsyalegsvfvggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglg
apywdqyargtiigvtrgttdghiaratlegiafqvydivkameadaetqstelrvdgga
sasnllmqiqsdlfgfkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftp
kedktkidnmvsfwhkavkrsqawied

    Sequence, based on observed residues (ATOM records): (download) 
    >6udeC (C:)
eklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpneiwssqisvaae
viakagisglevaaigitnqrettvvwdrhtsepiynaivwqdrrtskycdelksqghtd
eikqktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliwkltrgkmfitd
vsnasrtmmfnirtmdwdddllklfniprailpevkqssevygetsttstkipiagiagd
qqaalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvawkingevsyalegs
vfvggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglgapywdqyargtii
gvtrgttdghiaratlegiafqvydivkameadaetqstelrvdggasasnllmqiqsdl
fgfkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftpkedktkidnmvsf
whkavkrsqawied

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6udeD (D:)
mahhhhhhmmneklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpne
iwssqisvaaeviakagisglevaaigitnqrettvvwdrhtsepiynaivwqdrrtsky
cdelksqghtdeikqktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliw
kltrgkmfitdvsnasrtmmfnirtmdwdddllklfniprailpevkqssevygetsttl
fstkipiagiagdqqaalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvaw
kingevsyalegsvfvggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglg
apywdqyargtiigvtrgttdghiaratlegiafqvydivkameadaetqstelrvdgga
sasnllmqiqsdlfgfkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftp
kedktkidnmvsfwhkavkrsqawied

    Sequence, based on observed residues (ATOM records): (download) 
    >6udeD (D:)
eklilaldqgttssrailfnksgeikfvsqksfeqifptpgwvehdpneiwssqisvaae
viakagevaaigitnqrettvvwdrhtsepiynaivwqdrrtskycdelksqghtdeikq
ktglvldayfsatklkwildnvegarekaeagdlcfgtvdtwliwkltrgkmfitdvsna
srtmmfnirtmdwdddllklfniprailpevkqssevygetsttlfstkipiagiagdqq
aalfgqmctkpgmvkntygtgcfllmntgneavysknnllttvawkingevsyalegsvf
vggaaiqwlrdglkiihdssevstlaetvednggvyfvpaltglgapywdqyargtiigv
trgttdghiaratlegiafqvydivkameadaetqstelrvdggasasnllmqiqsdlfg
fkiirpktlettalgaaylaglavgfwesideiqsqwiiekeftpkedktkidnmvsfwh
kavkrsqawied