PDB entry 6udb

View 6udb on RCSB PDB site
Description: Spectroscopic and structural characterization of a genetically encoded direct sensor for protein-ligand interactions
Class: fluorescent protein
Keywords: unnatural amino acid, non-canonical amino acid, fluorescence, biosensor, small molecule biosensor, ligand detection, FLUORESCENT PROTEIN
Deposited on 2019-09-19, released 2020-09-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-23, with a file datestamp of 2020-09-18.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: N/A
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: streptavidin
    Species: Streptomyces avidinii [TaxId:1895]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22629 (1-End)
      • conflict (98)
    Domains in SCOPe 2.08: d6udba_
  • Chain 'B':
    Compound: streptavidin
    Species: Streptomyces avidinii [TaxId:1895]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22629
      • conflict (98)
    Domains in SCOPe 2.08: d6udbb_
  • Chain 'C':
    Compound: streptavidin
    Species: Streptomyces avidinii [TaxId:1895]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22629
      • conflict (98)
    Domains in SCOPe 2.08: d6udbc_
  • Chain 'D':
    Compound: streptavidin
    Species: Streptomyces avidinii [TaxId:1895]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22629
      • conflict (98)
    Domains in SCOPe 2.08: d6udbd_
  • Heterogens: DV7, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6udbA (A:)
maeagitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgt
algwtvawknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtft
kvkpsaaslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6udbA (A:)
aeagitgtwynqlgstfivtagadgaltgtyesvgnaesryvltgrydsapatdgsgtal
gwtvawknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtftkv
kp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6udbB (B:)
maeagitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgt
algwtvawknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtft
kvkpsaaslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6udbB (B:)
agitgtwynqlgstfivtagadgaltgtyesgnaesryvltgrydsapatdgsgtalgwt
vawknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtftkvkps
a

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6udbC (C:)
maeagitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgt
algwtvawknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtft
kvkpsaaslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6udbC (C:)
agitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalg
wtvawknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtftkvk
ps

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6udbD (D:)
maeagitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgt
algwtvawknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtft
kvkpsaaslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6udbD (D:)
agitgtwynqlgstfivtagadgaltgtyesnaesryvltgrydsapatdgsgtalgwtv
awknnyrnahsattwsgqyvggaearintqwlxtsgtteanawkstlvghdtftkvkp