PDB entry 6ud3

View 6ud3 on RCSB PDB site
Description: full length glycine receptor reconstituted in lipid nanodisc in gly/ptx-bound open/blocked conformation
Deposited on 2019-09-18, released 2020-07-29
The last revision was dated 2020-08-12, with a file datestamp of 2020-08-07.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: RI5, GLY, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ud3A (A:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqglvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ud3A (A:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhkellmrklfisrakridtvsrvafplvflifnifywitykiirsedi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ud3B (B:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqglvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ud3B (B:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhkellmrklfisrakridtvsrvafplvflifnifywitykiirsedi

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ud3C (C:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqglvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ud3C (C:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhkellmrklfisrakridtvsrvafplvflifnifywitykiirsedi

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ud3D (D:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqglvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ud3D (D:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhkellmrklfisrakridtvsrvafplvflifnifywitykiirsedi

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ud3E (E:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqglvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ud3E (E:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhkellmrklfisrakridtvsrvafplvflifnifywitykiirsedi