PDB entry 6ud1

View 6ud1 on RCSB PDB site
Description: Spectroscopic and structural characterization of a genetically encoded direct sensor for protein-ligand interactions
Class: fluorescent protein
Keywords: unnatural amino acid, non-canonical amino acid, fluorescence, biosensor, small molecule biosensor, ligand detection, FLUORESCENT PROTEIN
Deposited on 2019-09-18, released 2021-02-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: streptavidin
    Species: Streptomyces avidinii [TaxId:1895]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22629
      • conflict (108)
    Domains in SCOPe 2.08: d6ud1a_
  • Chain 'B':
    Compound: streptavidin
    Species: Streptomyces avidinii [TaxId:1895]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22629
      • conflict (108)
    Domains in SCOPe 2.08: d6ud1b_
  • Heterogens: DV7, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ud1A (A:)
maeagitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgt
algwtvawknnyrnahsattwsgqyvggaearintqwlltsgtteanaxkstlvghdtft
kvkpsaaslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ud1A (A:)
agitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalg
wtvawknnyrnahsattwsgqyvggaearintqwlltsgtteanaxkstlvghdtftkvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ud1B (B:)
maeagitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgt
algwtvawknnyrnahsattwsgqyvggaearintqwlltsgtteanaxkstlvghdtft
kvkpsaaslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ud1B (B:)
eagitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtal
gwtvawknnyrnahsattwsgqyvggaearintqwlltsgtteanaxkstlvghdtftkv
kp