PDB entry 6ubz

View 6ubz on RCSB PDB site
Description: crystal structure of d678a goxa bound to glycine at ph 5.5
Deposited on 2019-09-13, released 2019-10-23
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized protein GoxA
    Species: Pseudoalteromonas luteoviolacea DSM 6061 [TaxId:1365250]
    Gene: N475_19905
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A161XU12 (Start-815)
      • engineered mutation (677)
  • Chain 'B':
    Compound: Uncharacterized protein GoxA
    Species: Pseudoalteromonas luteoviolacea DSM 6061 [TaxId:1365250]
    Gene: N475_19905
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A161XU12 (Start-815)
      • engineered mutation (677)
  • Chain 'C':
    Compound: Uncharacterized protein GoxA
    Species: Pseudoalteromonas luteoviolacea DSM 6061 [TaxId:1365250]
    Gene: N475_19905
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A161XU12 (Start-815)
      • engineered mutation (677)
  • Chain 'D':
    Compound: Uncharacterized protein GoxA
    Species: Pseudoalteromonas luteoviolacea DSM 6061 [TaxId:1365250]
    Gene: N475_19905
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A161XU12 (Start-815)
      • engineered mutation (677)
  • Heterogens: MG, GLY, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ubzA (A:)
msncqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeaf
ggnvineisqiktklderkaekfkqeeietitgllglshlvpqqqlsrsldnlelkstkd
sddivqqikgallkvlsdhylhavkkqaqnfyiykcdeqgnpveklkltdgdkvtwrvev
ankksfwydynnaldlslhtqgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvis
sqgsvssdnntqvplrgkfpanepdtnnrlsdllnlqerhnvlqgsiecdnegvlrfyag
ngisqalspsslntdfadnsnwfddicdgrvtavvelkngdtfeiqdeqssawvattppd
yapqiepivtmydmvsgaalkeqdldnlttqfsdvfpilyrlyrmqwvnqadftdnavnt
qirelnselgfaqlldnsasakslregifnqfrnplfdqdidvddpgqssnewvsnsrii
pskdetniaakpatsslklpfypndgidypgspvqwfaippfmyqhlqnwaagdfsvtqv
ekesantieelglfyseqfknspnsallcargaldalygggfhpgveltwpmrhnliysq
ndyvssvtpeinllglrefrlkqdlqglnspnmyqdfghviavdnvtasidpnsdaawlw
rstpgdltkwmgipwqsaaascqavytpedfpipswwaanlpvhvlplarynkfkdsqsa
dlpeingmthsiaqgmseetfehlrleqfsqrldwlhtadlgfvgyhaeggytngliqmv
sqwknmamvmarpvenpgssgipnvvyvaysqadkd

    Sequence, based on observed residues (ATOM records):
    >6ubzA (A:)
cqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeafggn
vineisqiktklderkaekfkqeeietitgllglshlvpqqqlsrsldnlelksddivqq
ikgallkvlsdhylhavkkqaqnfyiykcdnpveklkltdgdkvtwrvevankksfwydy
nnaldlslhtqgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvissqgsvssdnn
tqvplrgkfpanerhnvlqgsiecdnegvlrfyagngisqalspsslntdfadnsnwfdd
icdgrvtavvelkngdtfeiqdeqssawvattppdyapqiepivtmydmvsgaalkeqdl
dnlttqfsdvfpilyrlyrmqwvnqadftdnavntqirelnselgfaqlldnsasakslr
egifnqfrnplfdqdidvddpgqssnewvsnsriipskdetniaakpatsslklpfypnd
gidypgspvqwfaippfmyqhlqnwaagdfsvtqvekesantieelglfyseqfknspns
allcargaldalygggfhpgveltwpmrhnliysqndyvssvtpeinllglrefrlkqdl
qglnspnmyqdfghviavdnvtasidpnsdaawlwrstpgdltkwmgipwqsaaascqav
ytpedfpipswwaanlpvhvlplarynkfkdsqsadlpeingmthsiaqgmseetfehlr
leqfsqrldwlhtadlgfvgyhaeggytngliqmvsqwknmamvmarpvenpgssgipnv
vyvaysqadkd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ubzB (B:)
msncqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeaf
ggnvineisqiktklderkaekfkqeeietitgllglshlvpqqqlsrsldnlelkstkd
sddivqqikgallkvlsdhylhavkkqaqnfyiykcdeqgnpveklkltdgdkvtwrvev
ankksfwydynnaldlslhtqgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvis
sqgsvssdnntqvplrgkfpanepdtnnrlsdllnlqerhnvlqgsiecdnegvlrfyag
ngisqalspsslntdfadnsnwfddicdgrvtavvelkngdtfeiqdeqssawvattppd
yapqiepivtmydmvsgaalkeqdldnlttqfsdvfpilyrlyrmqwvnqadftdnavnt
qirelnselgfaqlldnsasakslregifnqfrnplfdqdidvddpgqssnewvsnsrii
pskdetniaakpatsslklpfypndgidypgspvqwfaippfmyqhlqnwaagdfsvtqv
ekesantieelglfyseqfknspnsallcargaldalygggfhpgveltwpmrhnliysq
ndyvssvtpeinllglrefrlkqdlqglnspnmyqdfghviavdnvtasidpnsdaawlw
rstpgdltkwmgipwqsaaascqavytpedfpipswwaanlpvhvlplarynkfkdsqsa
dlpeingmthsiaqgmseetfehlrleqfsqrldwlhtadlgfvgyhaeggytngliqmv
sqwknmamvmarpvenpgssgipnvvyvaysqadkd

    Sequence, based on observed residues (ATOM records):
    >6ubzB (B:)
cqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeafggn
vineisqiktklkfkqeeietitgllglshlvpqqqlsrsldnledivqqikgallkvls
dhylhavkkqaqnfyiykcdeqgnpveklkltdgdkvtwrvevankksfwydynnaldls
lhtqgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvissqgsvssdnntqvplrg
kfpanlqerhnvlqgsiecdnegvlrfyagngisqalspsslntdfadnsnwfddicdgr
vtavvelkngdtfeiqdeqssawvattppdyapqiepivtmydmvsgaalkeqdldnltt
qfsdvfpilyrlyrmqwvnqadftdnavntqirelnselgfaqlldnsasakslregifn
qfrnplfdqdidvddpsnewvsnsriipskdetniaakpatsslklpfypndgidypgsp
vqwfaippfmyqhlqnwaagdfsvtqvekesantieelglfyseqfknspnsallcarga
ldalygggfhpgveltwpmrhnliysqndyvssvtpeinllglrefrlkqdlqglnspnm
yqdfghviavdnvtasidpnsdaawlwrstpgdltkwmgipwqsaaascqavytpedfpi
pswwaanlpvhvlplarynkfkdsqsadlpeingmthsiaqgmseetfehlrleqfsqrl
dwlhtadlgfvgyhaeggytngliqmvsqwknmamvmarpvenpgssgipnvvyvaysqa
dkd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ubzC (C:)
msncqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeaf
ggnvineisqiktklderkaekfkqeeietitgllglshlvpqqqlsrsldnlelkstkd
sddivqqikgallkvlsdhylhavkkqaqnfyiykcdeqgnpveklkltdgdkvtwrvev
ankksfwydynnaldlslhtqgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvis
sqgsvssdnntqvplrgkfpanepdtnnrlsdllnlqerhnvlqgsiecdnegvlrfyag
ngisqalspsslntdfadnsnwfddicdgrvtavvelkngdtfeiqdeqssawvattppd
yapqiepivtmydmvsgaalkeqdldnlttqfsdvfpilyrlyrmqwvnqadftdnavnt
qirelnselgfaqlldnsasakslregifnqfrnplfdqdidvddpgqssnewvsnsrii
pskdetniaakpatsslklpfypndgidypgspvqwfaippfmyqhlqnwaagdfsvtqv
ekesantieelglfyseqfknspnsallcargaldalygggfhpgveltwpmrhnliysq
ndyvssvtpeinllglrefrlkqdlqglnspnmyqdfghviavdnvtasidpnsdaawlw
rstpgdltkwmgipwqsaaascqavytpedfpipswwaanlpvhvlplarynkfkdsqsa
dlpeingmthsiaqgmseetfehlrleqfsqrldwlhtadlgfvgyhaeggytngliqmv
sqwknmamvmarpvenpgssgipnvvyvaysqadkd

    Sequence, based on observed residues (ATOM records):
    >6ubzC (C:)
cqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeafggn
vineisqiktklderkaekfkqeeietitgllglshlvpqqqlsrsldnledivqqikga
llkvlsdhylhavkkqaqnfyiykcdnpveklkltdgdkvtwrvevankksfwydynnal
dlslhtqgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvissqgsvssdnntqvp
lrgkfpanqerhnvlqgsiecdnegvlrfyagngisqalspsslntdfadnsnwfddicd
grvtavvelkngdtfeiqdeqssawvattppdyapqiepivtmydmvsgaalkeqdldnl
ttqfsdvfpilyrlyrmqwvnqadftdnavntqirelnselgfaqlldnsasakslregi
fnqfrnplfdqdidvddpsnewvsnsriipskdetniaakpatsslklpfypndgidypg
spvqwfaippfmyqhlqnwaagdfsvtqvekesantieelglfyseqfknspnsallcar
galdalygggfhpgveltwpmrhnliysqndyvssvtpeinllglrefrlkqdlqglnsp
nmyqdfghviavdnvtasidpnsdaawlwrstpgdltkwmgipwqsaaascqavytpedf
pipswwaanlpvhvlplarynkfkdsqsadlpeingmthsiaqgmseetfehlrleqfsq
rldwlhtadlgfvgyhaeggytngliqmvsqwknmamvmarpvenpgssgipnvvyvays
qadkd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ubzD (D:)
msncqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeaf
ggnvineisqiktklderkaekfkqeeietitgllglshlvpqqqlsrsldnlelkstkd
sddivqqikgallkvlsdhylhavkkqaqnfyiykcdeqgnpveklkltdgdkvtwrvev
ankksfwydynnaldlslhtqgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvis
sqgsvssdnntqvplrgkfpanepdtnnrlsdllnlqerhnvlqgsiecdnegvlrfyag
ngisqalspsslntdfadnsnwfddicdgrvtavvelkngdtfeiqdeqssawvattppd
yapqiepivtmydmvsgaalkeqdldnlttqfsdvfpilyrlyrmqwvnqadftdnavnt
qirelnselgfaqlldnsasakslregifnqfrnplfdqdidvddpgqssnewvsnsrii
pskdetniaakpatsslklpfypndgidypgspvqwfaippfmyqhlqnwaagdfsvtqv
ekesantieelglfyseqfknspnsallcargaldalygggfhpgveltwpmrhnliysq
ndyvssvtpeinllglrefrlkqdlqglnspnmyqdfghviavdnvtasidpnsdaawlw
rstpgdltkwmgipwqsaaascqavytpedfpipswwaanlpvhvlplarynkfkdsqsa
dlpeingmthsiaqgmseetfehlrleqfsqrldwlhtadlgfvgyhaeggytngliqmv
sqwknmamvmarpvenpgssgipnvvyvaysqadkd

    Sequence, based on observed residues (ATOM records):
    >6ubzD (D:)
cqykiypplgiarvgngpaikplslstpevpwahlydtnvqylvtqqeleqlleeafggn
vineisqiktklkfkqeeietitgllglshlvpqqqlsrsldnlvqqikgallkvlsdhy
lhavkkqaqnfyiykcdeqgnpveklkltdgdkvtwrvevankksfwydynnaldlslht
qgsgnlsknvskhrlapamtakrrnpnvitnslrkqlvissqgsvssdnntqvplrgkfp
anrhnvlqgsiecdnegvlrfyagngisqalspsslntdfadnsnwfddicdgrvtavve
lkngdtfeiqdeqssawvattppdyapqiepivtmydmvsgaalkeqdldnlttqfsdvf
pilyrlyrmqwvnqadftdnavntqirelnselgfaqlldnsasakslregifnqfrnpl
fdqdidvddpgqssnewvsnsriipskdetniaakpatsslklpfypndgidypgspvqw
faippfmyqhlqnwaagdfsvtqvekesantieelglfyseqfknspnsallcargalda
lygggfhpgveltwpmrhnliysqndyvssvtpeinllglrefrlkqdlqglnspnmyqd
fghviavdnvtasidpnsdaawlwrstpgdltkwmgipwqsaaascqavytpedfpipsw
waanlpvhvlplarynkfkdsqsadlpeingmthsiaqgmseetfehlrleqfsqrldwl
htadlgfvgyhaeggytngliqmvsqwknmamvmarpvenpgssgipnvvyvaysqadkd