PDB entry 6ubb

View 6ubb on RCSB PDB site
Description: crystal structure of a gh128 (subgroup vi) exo-beta-1,3-glucanase from aureobasidium namibiae (angh128_vi) with laminaribiose at the surface-binding site
Deposited on 2019-09-11, released 2020-05-20
The last revision was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A074W9U7 (20-265)
      • expression tag (17-19)
  • Chain 'D':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Glyco_hydro_cc domain-containing protein
    Species: Aureobasidium namibiae CBS 147.97 [TaxId:1043004]
    Gene: M436DRAFT_66913
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ubbA (A:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbA (A:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ubbB (B:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbB (B:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ubbC (C:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbC (C:)
gshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgk
nnltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspsca
sdpagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewast
srsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwk
ymsdqpmhi

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ubbD (D:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbD (D:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ubbE (E:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbE (E:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ubbF (F:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbF (F:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ubbG (G:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbG (G:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ubbH (H:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbH (H:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6ubbI (I:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbI (I:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6ubbJ (J:)
mgsshhhhhhssglvpagshmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwy
pdelkhrlpfrpmihgknnltggewqnilktneevihffneperagispeeaakiwndqv
lalrtshhkrlvspscasdpagiawikkwmnlvaknppdylglhwygtkgdemirylesm
hkehphqpiivsewastsrsypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvsp
eaqlmnkdgsftdlmwkymsdqpmhi

    Sequence, based on observed residues (ATOM records):
    >6ubbJ (J:)
hmvkkrvllwdytntrdvkwamdkinfkgplhscsnwntwypdelkhrlpfrpmihgknn
ltggewqnilktneevihffneperagispeeaakiwndqvlalrtshhkrlvspscasd
pagiawikkwmnlvaknppdylglhwygtkgdemirylesmhkehphqpiivsewastsr
sypdvlgltvqlanwmdstpwvaeyalfgcmrqmaddfvspeaqlmnkdgsftdlmwkym
sdqpmhi