PDB entry 6ub3

View 6ub3 on RCSB PDB site
Description: crystal structure of a gh128 (subgroup iv) endo-beta-1,3-glucanase from lentinula edodes (legh128_iv) with laminaribiose at the surface- binding site
Deposited on 2019-09-11, released 2020-05-20
The last revision was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycoside hydrolase
    Species: Lentinula edodes [TaxId:5353]
    Gene: GLU1
    Database cross-references and differences (RAF-indexed):
    • Uniprot G9M5R4 (23-269)
      • expression tag (22)
  • Chain 'B':
    Compound: glycoside hydrolase
    Species: Lentinula edodes [TaxId:5353]
    Gene: GLU1
    Database cross-references and differences (RAF-indexed):
    • Uniprot G9M5R4 (23-269)
      • expression tag (22)
  • Heterogens: BGC, CL, MES, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ub3A (A:)
mgsshhhhhhssglvprgshmasgkrglawpwynspldpgvlnngdgevvaiydwetyap
ptstggtgglgfigmqgtmdsdsspvaqlatrqaqqgwatvfslnepdingitpaeaasw
yiewvnplaikkalpavtssttsgqglswlsemisacagacyfdyinlhwygtsfaefqa
yieqahnqfpsytivisefaltnggnqvaffesafpfldglsyvllyfpfvatspallqa
ndpgavttvgtgsclytnaggpssvgnlmy

    Sequence, based on observed residues (ATOM records):
    >6ub3A (A:)
sgkrglawpwynspldpgvlnngdgevvaiydwetyapptstggtgglgfigmqgtmdsd
sspvaqlatrqaqqgwatvfslnepdingitpaeaaswyiewvnplaikkalpavtsstt
sgqglswlsemisacagacyfdyinlhwygtsfaefqayieqahnqfpsytivisefalt
nggnqvaffesafpfldglsyvllyfpfvatspallqandpgavttvgtgsclytnaggp
ssvgnlmy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ub3B (B:)
mgsshhhhhhssglvprgshmasgkrglawpwynspldpgvlnngdgevvaiydwetyap
ptstggtgglgfigmqgtmdsdsspvaqlatrqaqqgwatvfslnepdingitpaeaasw
yiewvnplaikkalpavtssttsgqglswlsemisacagacyfdyinlhwygtsfaefqa
yieqahnqfpsytivisefaltnggnqvaffesafpfldglsyvllyfpfvatspallqa
ndpgavttvgtgsclytnaggpssvgnlmy

    Sequence, based on observed residues (ATOM records):
    >6ub3B (B:)
sgkrglawpwynspldpgvlnngdgevvaiydwetyapptstggtgglgfigmqgtmdsd
sspvaqlatrqaqqgwatvfslnepdingitpaeaaswyiewvnplaikkalpavtsstt
sgqglswlsemisacagacyfdyinlhwygtsfaefqayieqahnqfpsytivisefalt
nggnqvaffesafpfldglsyvllyfpfvatspallqandpgavttvgtgsclytnaggp
ssvgnlmy