PDB entry 6u7k

View 6u7k on RCSB PDB site
Description: prefusion structure of pedv spike
Deposited on 2019-09-03, released 2019-09-18
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: EM
Resolution: 3.14 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Porcine epidemic diarrhea virus (strain CV777) [TaxId:229032]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Porcine epidemic diarrhea virus (strain CV777) [TaxId:229032]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Porcine epidemic diarrhea virus (strain CV777) [TaxId:229032]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6u7kA (A:)
mrsliyfwlllpvlptlslpqdvtrcqsttnfrrffskfnvqapavvvlggylpsmnsss
wycgtgietasgvhgiflsyidsgqgfeigisqepfdpsgyqlylhkatngntnaiarlr
icqfpdnktlgptvndvttgrnclfnkaipaymrdgkdivvgitwdndrvtvfadkiyhf
ylkndwsrvatrcynrrscamqyvytptyymlnvtsagedgiyyepctanctgyaanvfa
tdsnghipegfsfnnwfllsndstllhgkvvsnqpllvncllaipkiyglgqffsfnhtm
dgvcngaavdrapealrfnindtsvilaegsivlhtalgtnlsfvcsnssdphlaifaip
lgatevpyycflkvdtynstvykflavlpptvreivitkygdvyvngfgylhlglldavt
inftghgtdddvsgfwtiastnfvdalievqgtsiqrilycddpvsqlkcsqvafdlddg
fypissrnllsheqpisfvtlpsfndhsfvnitvsaafgglssanlvasdttingfssfc
vdtrqftitlfynvtnsygyvsksqdsncpftlqsvndylsfskfcvstsllagactidl
fgypafgsgvkltslyfqftkgelitgtpkplegitdvsfmtldvctkytiygfkgegii
tltnssilagvyytsdsgqllafknvtsgavysvtpcsfseqaayvnddivgvisslsns
tfnntrelpgffyhsndgsnctepvlvysnigvcksgsigyvpsqygqvkiaptvtgnis
iptnfsmsirteylqlyntpvsvdcatyvcngnsrckqlltqytaacktiesalqlsarl
esvevnsmltiseealqlatissfngdgynftnvlgasvydpasgrvvqkrsviedllfn
kvvtnglgtvdedykrcsngrsvadlvcaqyysgvmvlpgvvdaeklhmysasliggmal
ggitaaaalpfsyavqarlnylalqtdvlqrnqqllaesfnsaignitsafesvkeaisq
tskglntvahaltkvqevvnsqgsalnqltvqlqhnfqaisssiddiysrldilsadvqv
drlitgrlsalnafvaqtltkytevqasrklaqqkvnecvksqsqrygfcggdgehifsl
vqaapqgllflhtvlvpgdfvnvlaiaglcvngeialtlrepglvlfthelqtytateyf
vssrrmfeprkptvsdfvqiescvvtyvnltsdqlpdvipdyidvnktldeilaslpnrt
gpslpldvfnatylnltgeiadleqrseslrntteelrslinninntlvdlewlnrvetg
sgyipeaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgg
gsggggsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6u7kA (A:)
apavvvlggylpsvhgiflsvgitwdndrvtvfadkiyhfylknamqyvytptyymlnvt
sagiyyepctanctgyaanvfatdsnghipegfsfnnwfllsndstllhgkvvsnqpllv
ncllaipkiyglgqffsfnhtmdgvcngaavdrapealrfnindtsvilaegsivlhtal
gtnlsfvcsnssdphlatevpyycflkvdtynstvykflavlpptvreivitkygdvyvn
gfgylhlglldavtinftghgtdddvsgfwtiastnfvdalievqgtsiqrilycddpvs
qlkcsqvafdlddgfypissrnllsheqpisfvtlpsfndhsfvnitvsaafgglssanl
vasdttingfssfcvdtrqftitlfynvtnsygyvsksqdsncpftlqsvndylsfskfc
vstsllagactidlfgypafgsgvkltslyfqftkgelitgtpkplegitdvsfmtldvc
tkytiygfkgegiitltnssilagvyytsdsgqllafknvtsgavysvtpcsfseqaayv
nddivgvisslsnstfnntrelpgffyhsndgsnctepvlvysnigvcksgsigyvpsqy
gqvkiaptvtgnisiptnfsmsirteylqlyntpvsvdcatyvcngnsrckqlltqytaa
cktiesalqlsarlesvevnsmltiseealqlatissfngdgynftnvlgakrsviedll
fnkvvtnglgtvdedykrcsngrsvadlvcaqyysgvmvlpgvvdaeklhmysasliggm
alggitaaaalpfsyavqarlnylalqtdvlqrnqqllaesfnsaignitsafesvkeai
sqtskglntvahaltkvqevvnsqgsalnqltvqlqhnfqaisssiddiysrldilsadv
qvdrlitgrlsalnafvaqtltkytevqasrklaqqkvnecvksqsqrygfcggdgehif
slvqaapqgllflhtvlvpgdfvnvlaiaglcvngeialtlrepglvlfthelqtytate
yfvssrrmfeprkptvsdfvqiescvvtyvnltsdqlpdvipdy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6u7kB (B:)
mrsliyfwlllpvlptlslpqdvtrcqsttnfrrffskfnvqapavvvlggylpsmnsss
wycgtgietasgvhgiflsyidsgqgfeigisqepfdpsgyqlylhkatngntnaiarlr
icqfpdnktlgptvndvttgrnclfnkaipaymrdgkdivvgitwdndrvtvfadkiyhf
ylkndwsrvatrcynrrscamqyvytptyymlnvtsagedgiyyepctanctgyaanvfa
tdsnghipegfsfnnwfllsndstllhgkvvsnqpllvncllaipkiyglgqffsfnhtm
dgvcngaavdrapealrfnindtsvilaegsivlhtalgtnlsfvcsnssdphlaifaip
lgatevpyycflkvdtynstvykflavlpptvreivitkygdvyvngfgylhlglldavt
inftghgtdddvsgfwtiastnfvdalievqgtsiqrilycddpvsqlkcsqvafdlddg
fypissrnllsheqpisfvtlpsfndhsfvnitvsaafgglssanlvasdttingfssfc
vdtrqftitlfynvtnsygyvsksqdsncpftlqsvndylsfskfcvstsllagactidl
fgypafgsgvkltslyfqftkgelitgtpkplegitdvsfmtldvctkytiygfkgegii
tltnssilagvyytsdsgqllafknvtsgavysvtpcsfseqaayvnddivgvisslsns
tfnntrelpgffyhsndgsnctepvlvysnigvcksgsigyvpsqygqvkiaptvtgnis
iptnfsmsirteylqlyntpvsvdcatyvcngnsrckqlltqytaacktiesalqlsarl
esvevnsmltiseealqlatissfngdgynftnvlgasvydpasgrvvqkrsviedllfn
kvvtnglgtvdedykrcsngrsvadlvcaqyysgvmvlpgvvdaeklhmysasliggmal
ggitaaaalpfsyavqarlnylalqtdvlqrnqqllaesfnsaignitsafesvkeaisq
tskglntvahaltkvqevvnsqgsalnqltvqlqhnfqaisssiddiysrldilsadvqv
drlitgrlsalnafvaqtltkytevqasrklaqqkvnecvksqsqrygfcggdgehifsl
vqaapqgllflhtvlvpgdfvnvlaiaglcvngeialtlrepglvlfthelqtytateyf
vssrrmfeprkptvsdfvqiescvvtyvnltsdqlpdvipdyidvnktldeilaslpnrt
gpslpldvfnatylnltgeiadleqrseslrntteelrslinninntlvdlewlnrvetg
sgyipeaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgg
gsggggsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6u7kB (B:)
apavvvlggylpsvhgiflsvgitwdndrvtvfadkiyhfylknamqyvytptyymlnvt
sagiyyepctanctgyaanvfatdsnghipegfsfnnwfllsndstllhgkvvsnqpllv
ncllaipkiyglgqffsfnhtmdgvcngaavdrapealrfnindtsvilaegsivlhtal
gtnlsfvcsnssdphlatevpyycflkvdtynstvykflavlpptvreivitkygdvyvn
gfgylhlglldavtinftghgtdddvsgfwtiastnfvdalievqgtsiqrilycddpvs
qlkcsqvafdlddgfypissrnllsheqpisfvtlpsfndhsfvnitvsaafgglssanl
vasdttingfssfcvdtrqftitlfynvtnsygyvsksqdsncpftlqsvndylsfskfc
vstsllagactidlfgypafgsgvkltslyfqftkgelitgtpkplegitdvsfmtldvc
tkytiygfkgegiitltnssilagvyytsdsgqllafknvtsgavysvtpcsfseqaayv
nddivgvisslsnstfnntrelpgffyhsndgsnctepvlvysnigvcksgsigyvpsqy
gqvkiaptvtgnisiptnfsmsirteylqlyntpvsvdcatyvcngnsrckqlltqytaa
cktiesalqlsarlesvevnsmltiseealqlatissfngdgynftnvlgakrsviedll
fnkvvtnglgtvdedykrcsngrsvadlvcaqyysgvmvlpgvvdaeklhmysasliggm
alggitaaaalpfsyavqarlnylalqtdvlqrnqqllaesfnsaignitsafesvkeai
sqtskglntvahaltkvqevvnsqgsalnqltvqlqhnfqaisssiddiysrldilsadv
qvdrlitgrlsalnafvaqtltkytevqasrklaqqkvnecvksqsqrygfcggdgehif
slvqaapqgllflhtvlvpgdfvnvlaiaglcvngeialtlrepglvlfthelqtytate
yfvssrrmfeprkptvsdfvqiescvvtyvnltsdqlpdvipdy

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6u7kC (C:)
mrsliyfwlllpvlptlslpqdvtrcqsttnfrrffskfnvqapavvvlggylpsmnsss
wycgtgietasgvhgiflsyidsgqgfeigisqepfdpsgyqlylhkatngntnaiarlr
icqfpdnktlgptvndvttgrnclfnkaipaymrdgkdivvgitwdndrvtvfadkiyhf
ylkndwsrvatrcynrrscamqyvytptyymlnvtsagedgiyyepctanctgyaanvfa
tdsnghipegfsfnnwfllsndstllhgkvvsnqpllvncllaipkiyglgqffsfnhtm
dgvcngaavdrapealrfnindtsvilaegsivlhtalgtnlsfvcsnssdphlaifaip
lgatevpyycflkvdtynstvykflavlpptvreivitkygdvyvngfgylhlglldavt
inftghgtdddvsgfwtiastnfvdalievqgtsiqrilycddpvsqlkcsqvafdlddg
fypissrnllsheqpisfvtlpsfndhsfvnitvsaafgglssanlvasdttingfssfc
vdtrqftitlfynvtnsygyvsksqdsncpftlqsvndylsfskfcvstsllagactidl
fgypafgsgvkltslyfqftkgelitgtpkplegitdvsfmtldvctkytiygfkgegii
tltnssilagvyytsdsgqllafknvtsgavysvtpcsfseqaayvnddivgvisslsns
tfnntrelpgffyhsndgsnctepvlvysnigvcksgsigyvpsqygqvkiaptvtgnis
iptnfsmsirteylqlyntpvsvdcatyvcngnsrckqlltqytaacktiesalqlsarl
esvevnsmltiseealqlatissfngdgynftnvlgasvydpasgrvvqkrsviedllfn
kvvtnglgtvdedykrcsngrsvadlvcaqyysgvmvlpgvvdaeklhmysasliggmal
ggitaaaalpfsyavqarlnylalqtdvlqrnqqllaesfnsaignitsafesvkeaisq
tskglntvahaltkvqevvnsqgsalnqltvqlqhnfqaisssiddiysrldilsadvqv
drlitgrlsalnafvaqtltkytevqasrklaqqkvnecvksqsqrygfcggdgehifsl
vqaapqgllflhtvlvpgdfvnvlaiaglcvngeialtlrepglvlfthelqtytateyf
vssrrmfeprkptvsdfvqiescvvtyvnltsdqlpdvipdyidvnktldeilaslpnrt
gpslpldvfnatylnltgeiadleqrseslrntteelrslinninntlvdlewlnrvetg
sgyipeaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgg
gsggggsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6u7kC (C:)
apavvvlggylpsvhgiflsvgitwdndrvtvfadkiyhfylknamqyvytptyymlnvt
sagiyyepctanctgyaanvfatdsnghipegfsfnnwfllsndstllhgkvvsnqpllv
ncllaipkiyglgqffsfnhtmdgvcngaavdrapealrfnindtsvilaegsivlhtal
gtnlsfvcsnssdphlatevpyycflkvdtynstvykflavlpptvreivitkygdvyvn
gfgylhlglldavtinftghgtdddvsgfwtiastnfvdalievqgtsiqrilycddpvs
qlkcsqvafdlddgfypissrnllsheqpisfvtlpsfndhsfvnitvsaafgglssanl
vasdttingfssfcvdtrqftitlfynvtnsygyvsksqdsncpftlqsvndylsfskfc
vstsllagactidlfgypafgsgvkltslyfqftkgelitgtpkplegitdvsfmtldvc
tkytiygfkgegiitltnssilagvyytsdsgqllafknvtsgavysvtpcsfseqaayv
nddivgvisslsnstfnntrelpgffyhsndgsnctepvlvysnigvcksgsigyvpsqy
gqvkiaptvtgnisiptnfsmsirteylqlyntpvsvdcatyvcngnsrckqlltqytaa
cktiesalqlsarlesvevnsmltiseealqlatissfngdgynftnvlgakrsviedll
fnkvvtnglgtvdedykrcsngrsvadlvcaqyysgvmvlpgvvdaeklhmysasliggm
alggitaaaalpfsyavqarlnylalqtdvlqrnqqllaesfnsaignitsafesvkeai
sqtskglntvahaltkvqevvnsqgsalnqltvqlqhnfqaisssiddiysrldilsadv
qvdrlitgrlsalnafvaqtltkytevqasrklaqqkvnecvksqsqrygfcggdgehif
slvqaapqgllflhtvlvpgdfvnvlaiaglcvngeialtlrepglvlfthelqtytate
yfvssrrmfeprkptvsdfvqiescvvtyvnltsdqlpdvipdy