PDB entry 6u51

View 6u51 on RCSB PDB site
Description: Anti-Sudan ebolavirus Nucleoprotein Single Domain Antibody Sudan B (SB) Complexed with Sudan ebolavirus Nucleoprotein C-terminal Domain 610-738
Class: immune system
Keywords: Antibody, nanobody, Ebola, filovirus, IMMUNE SYSTEM
Deposited on 2019-08-26, released 2019-11-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 2.52 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Anti-Sudan ebolavirus Nucleoprotein Single Domain Antibody Sudan B (SB)
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6U51 (Start-119)
    Domains in SCOPe 2.08: d6u51a_
  • Chain 'B':
    Compound: nucleoprotein
    Species: Sudan ebolavirus (strain Boniface-76) [TaxId:128948]
    Gene: NP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6u51b_
  • Chain 'C':
    Compound: Anti-Sudan ebolavirus Nucleoprotein Single Domain Antibody Sudan B (SB)
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6U51 (Start-119)
    Domains in SCOPe 2.08: d6u51c_
  • Chain 'D':
    Compound: nucleoprotein
    Species: Sudan ebolavirus (strain Boniface-76) [TaxId:128948]
    Gene: NP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6u51d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6u51A (A:)
qvklqqsgggsvqeggslrlscassgaffragpmgwyrrapgnerelvagisrngrtiya
pslkdrftisrdddnnilylqmsdltpgdtavyycnlnvrtavagrndywgqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6u51A (A:)
vklqqsgggsvqeggslrlscassgaffragpmgwyrrapgnerelvagisrngrtiyap
slkdrftisrdddnnilylqmsdltpgdtavyycnlnvrtavagrndywgqgtqvtvss

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6u51B (B:)
kihhhhhhgggsvykdtgvdtnqqngpsstvdsqgsesealpinskkssaleetyyhllk
tqgpfeainyyhlmsdepiafstesgkeyifpdsleeayppwlsekealekenrylvidg
qqflwpvmslrdkflavlqhd

    Sequence, based on observed residues (ATOM records): (download) 
    >6u51B (B:)
ssaleetyyhllktqgpfeainyyhlmsdepiafstesgkeyifpdsleeayppwlseke
alekrylvidgqqflwpvmslrdkflavlqhd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6u51C (C:)
qvklqqsgggsvqeggslrlscassgaffragpmgwyrrapgnerelvagisrngrtiya
pslkdrftisrdddnnilylqmsdltpgdtavyycnlnvrtavagrndywgqgtqvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6u51C (C:)
klqqsgggsvqeggslrlscassgaffragpmgwyrrapgnerelvagisrngrtiyaps
lkdrftisrdddnnilylqmsdltpgdtavyycnlnvrtavagrndywgqgtqvtvss

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6u51D (D:)
kihhhhhhgggsvykdtgvdtnqqngpsstvdsqgsesealpinskkssaleetyyhllk
tqgpfeainyyhlmsdepiafstesgkeyifpdsleeayppwlsekealekenrylvidg
qqflwpvmslrdkflavlqhd

    Sequence, based on observed residues (ATOM records): (download) 
    >6u51D (D:)
ssaleetyyhllktqgpfeainyyhlmsdepiafstesgkeyifpdsleeayppwlseke
alekenrylqflwpvmslrdkflavlqhd