PDB entry 6tyx

View 6tyx on RCSB PDB site
Description: structure of ku80 von willebrand domain s229a mutant complexed with xlf ku binding motif
Deposited on 2019-08-09, released 2019-11-27
The last revision was dated 2019-11-27, with a file datestamp of 2019-11-22.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: X-ray repair cross-complementing protein 5
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18044412mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: X-ray repair cross-complementing protein 5
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18044412mg
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1L8EVE5
      • initiating methionine (0)
      • expression tag (1-6)
      • engineered mutation (217)
  • Chain 'C':
    Compound: lys-gly-leu-phe-met
    Species: Xenopus laevis, synthetic [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TYX (Start-17)
  • Chain 'D':
    Compound: lys-gly-leu-phe-met
    Species: Xenopus laevis, synthetic [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TYX (Start-17)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6tyxA (A:)
mhhhhhhmaraaksavvlcmdvglamshsnqgkespfeqakkvmmlflqrqvfaeskdei
avvlygtdttdnalaredqyenisvhrhlmlpdfdlleqienvvepgsvqadfldalivs
mdllqketlgkkytrlhiavfsdlsspfsvdqleviianlkkaeitlqfflpfsvdegsg
pgkglsdqqkegiemvrkimfsldgeeglsevftfrdalerlsifkkierr

    Sequence, based on observed residues (ATOM records):
    >6tyxA (A:)
ksavvlcmdvglamshsnqgkespfeqakkvmmlflqrqvfaeskdeiavvlygtdttdn
alaredqyenisvhrhlmlpdfdlleqienvvepgsvqadfldalivsmdllqketlgkk
ytrlhiavfsdlsspfsvdqleviianlkkaeitlqfflpfsvdgpgkglsdqqkegiem
vrkimfsldgeeglsevftfrdalerlsifk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6tyxB (B:)
mhhhhhhmaraaksavvlcmdvglamshsnqgkespfeqakkvmmlflqrqvfaeskdei
avvlygtdttdnalaredqyenisvhrhlmlpdfdlleqienvvepgsvqadfldalivs
mdllqketlgkkytrlhiavfsdlsspfsvdqleviianlkkaeitlqfflpfsvdegsg
pgkglsdqqkegiemvrkimfsldgeeglsevftfrdalerlsifkkierr

    Sequence, based on observed residues (ATOM records):
    >6tyxB (B:)
mhhhhhhaaksavvlcmdvglamshsnqgkespfeqakkvmmlflqrqvfaeskdeiavv
lygtdttdnalaredqyenisvhrhlmlpdfdlleqienvvepgsvqadfldalivsmdl
lqketlgkkytrlhiavfsdlsspfsvdqleviianlkkaeitlqfflpfsvdkglsdqq
kegiemvrkimfsldgeeglsevftfrdalerlsif

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6tyxC (C:)
rppagaskpkkkakglfm

    Sequence, based on observed residues (ATOM records):
    >6tyxC (C:)
kglfm

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6tyxD (D:)
rppagaskpkkkakglfm

    Sequence, based on observed residues (ATOM records):
    >6tyxD (D:)
kakglfm