PDB entry 6txb

View 6txb on RCSB PDB site
Description: Crystal structure of Mindy1 mutant (P138A) in complex with Lys48 linked di-ubiquitin
Class: hydrolase
Keywords: hydrolase, cysteine protease, isopeptidase and ubiquitin binding
Deposited on 2020-01-14, released 2021-01-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 2.18 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin carboxyl-terminal hydrolase MINDY-1
    Species: Homo sapiens [TaxId:9606]
    Gene: MINDY1, FAM63A, KIAA1390
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8N5J2 (14-End)
      • expression tag (12-13)
      • engineered mutation (41-42)
  • Chain 'D':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6txbd_
  • Chain 'H':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6txbh_
  • Chain 'L':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6txbD (D:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6txbH (H:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6txbH (H:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlr

  • Chain 'L':
    No sequence available.