SCOPe 2.08: Structural Classification of Proteins

PDB entry 6tvf

View 6tvf on RCSB PDB site
Description: Crystal structure of the haemagglutinin from a H10N7 seal influenza virus isolated in Germany in complex with human receptor analogue, 6'-SLN
Class: viral protein
Keywords: receptor binding, fusion of virus membrane with host plasma membrane, VIRAL PROTEIN
Deposited on 2020-01-09, released 2020-10-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (2-End)
  - expression tag (0-1)
  - conflict (220)
Domains in SCOPe 2.08: d6tvfa1, d6tvfa2
Chain 'B':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (0-End)
Domains in SCOPe 2.08: d6tvfb_
Chain 'C':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (2-End)
  - expression tag (0-1)
  - conflict (220)
Domains in SCOPe 2.08: d6tvfc1, d6tvfc2
Chain 'D':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (0-End)
Domains in SCOPe 2.08: d6tvfd_
Chain 'E':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (2-End)
  - expression tag (0-1)
  - conflict (220)
Domains in SCOPe 2.08: d6tvfe1, d6tvfe2
Chain 'F':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (0-End)
Domains in SCOPe 2.08: d6tvff_
Chain 'G':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (2-End)
  - expression tag (0-1)
  - conflict (220)
Domains in SCOPe 2.08: d6tvfg1, d6tvfg2
Chain 'H':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (0-End)
Domains in SCOPe 2.08: d6tvfh_
Chain 'I':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (2-End)
  - expression tag (0-1)
  - conflict (220)
Domains in SCOPe 2.08: d6tvfi1, d6tvfi2
Chain 'J':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (0-End)
Domains in SCOPe 2.08: d6tvfj_
Chain 'K':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (2-End)
  - conflict (220)
Domains in SCOPe 2.08: d6tvfk_
Chain 'L':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:11320]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0A7HR51 (0-End)
Domains in SCOPe 2.08: d6tvfl_
Heterogens: SIA, GAL, NAG, CA, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>6tvfA (A:)
dpdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpig
mligtpacdlhltgtwdtlierknaiaycypgatvneealrqkimesggiskintgftyg
ssinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhp
sstqekndlygtqslsisvgsstyknnfvpvvgarpqvngqsgridfhwtlvqpgdkitf
shnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqc
pkyvnkkslmlatgmrnvpelvqgr