PDB entry 6tvc

View 6tvc on RCSB PDB site
Description: Crystal structure of the haemagglutinin from a transmissible H10N7 seal influenza virus isolated in Netherland
Class: viral protein
Keywords: receptor binding, fusion of virus membrane with host plasma membrane, VIRAL PROTEIN
Deposited on 2020-01-09, released 2020-10-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: haemagglutinin ha1
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A7HR51 (1-318)
      • expression tag (0)
      • conflict (96)
      • conflict (205)
      • conflict (237)
    Domains in SCOPe 2.07: d6tvca1, d6tvca2
  • Chain 'B':
    Compound: haemagglutinin ha2
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6tvcb_
  • Chain 'C':
    Compound: haemagglutinin ha1
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A7HR51 (1-318)
      • expression tag (0)
      • conflict (96)
      • conflict (205)
      • conflict (237)
    Domains in SCOPe 2.07: d6tvcc1, d6tvcc2
  • Chain 'D':
    Compound: haemagglutinin ha2
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6tvcd_
  • Chain 'E':
    Compound: haemagglutinin ha1
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A7HR51 (1-318)
      • expression tag (0)
      • conflict (96)
      • conflict (205)
      • conflict (237)
    Domains in SCOPe 2.07: d6tvce1, d6tvce2
  • Chain 'F':
    Compound: haemagglutinin ha2
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6tvcf_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6tvcA (A:)
pdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpigm
ligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftygs
sinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhps
stqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiifs
hnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqcp
kyvnkkslmlatgmrnvpe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6tvcB (B:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrln

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6tvcC (C:)
pdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpigm
ligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftygs
sinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhps
stqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiifs
hnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqcp
kyvnkkslmlatgmrnvpe

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6tvcD (D:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrln

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6tvcE (E:)
pdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpigm
ligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftygs
sinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhps
stqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiifs
hnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqcp
kyvnkkslmlatgmrnvpe

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6tvcF (F:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrln