PDB entry 6tvb

View 6tvb on RCSB PDB site
Description: Crystal structure of the haemagglutinin from a transmissible H10N7 seal influenza virus isolated in Netherland in complex with human receptor analogue 6'-SLN
Class: viral protein
Keywords: receptor binding, fusion of virus membrane with host plasma membrane, VIRAL PROTEIN
Deposited on 2020-01-09, released 2020-10-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A7HR51 (2-End)
      • expression tag (0-1)
      • conflict (97)
      • conflict (206)
      • conflict (238)
    Domains in SCOPe 2.08: d6tvba1, d6tvba2
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6tvbb_
  • Chain 'C':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A7HR51 (2-End)
      • expression tag (0-1)
      • conflict (97)
      • conflict (206)
      • conflict (238)
    Domains in SCOPe 2.08: d6tvbc1, d6tvbc2
  • Chain 'D':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6tvbd_
  • Chain 'E':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0A7HR51 (2-End)
      • expression tag (1)
      • conflict (97)
      • conflict (206)
      • conflict (238)
    Domains in SCOPe 2.08: d6tvbe1, d6tvbe2
  • Chain 'F':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6tvbf_
  • Heterogens: EDO, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6tvbA (A:)
dpdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpig
mligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftyg
ssinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhp
sstqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiif
shnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqc
pkyvnkkslmlatgmrnvpelvqgr

    Sequence, based on observed residues (ATOM records): (download) 
    >6tvbA (A:)
dpdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpig
mligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftyg
ssinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhp
sstqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiif
shnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqc
pkyvnkkslmlatgmrnvpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6tvbB (B:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrlninpvk

    Sequence, based on observed residues (ATOM records): (download) 
    >6tvbB (B:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrlninp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6tvbC (C:)
dpdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpig
mligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftyg
ssinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhp
sstqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiif
shnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqc
pkyvnkkslmlatgmrnvpelvqgr

    Sequence, based on observed residues (ATOM records): (download) 
    >6tvbC (C:)
dpdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpig
mligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftyg
ssinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhp
sstqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiif
shnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqc
pkyvnkkslmlatgmrnvpe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6tvbD (D:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrlninpvk

    Sequence, based on observed residues (ATOM records): (download) 
    >6tvbD (D:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrlninp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6tvbE (E:)
dpdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpig
mligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftyg
ssinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhp
sstqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiif
shnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqc
pkyvnkkslmlatgmrnvpelvqgr

    Sequence, based on observed residues (ATOM records): (download) 
    >6tvbE (E:)
pdkiclghhavangtivktltneqeevtnatetvestslnrlcmkgrnhkdlgnchpigm
ligtpacdlhltgtwdtlierknaiaycypgatvnekalrqkimesggiskintgftygs
sinsagttkacmrnggnsfyaelkwlvsknkgqnfpqttntyrnadtaehlimwgihhps
stqekndlygtqslsisvgsstyknsfvpvvgarpqvnglsgridfhwtlvqpgdkiifs
hnggliapsrvskligrglgiqseapidnsceskcfwrggsintrlpfqnlsprtvgqcp
kyvnkkslmlatgmrnvpelvq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6tvbF (F:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrlninpvk

    Sequence, based on observed residues (ATOM records): (download) 
    >6tvbF (F:)
glfgaiagfiengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnriikktn
tefesiesefseidhqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlye
rvrkqlrqnaeedgkgcfeiyhacddscmesirnntynhsqyreeallnrln