SCOPe 2.07: Structural Classification of Proteins

PDB entry 6tsk

View 6tsk on RCSB PDB site
Description: Beta-galactosidase in complex with L-ribose
Class: sugar binding protein
Keywords: Bgal, L-ribose, SUGAR BINDING PROTEIN
Deposited on 2019-12-20, released 2020-01-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: EM
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: LacZ protein
Species: Human alphaherpesvirus 1 strain RH2 [TaxId:946522]
Gene: lacZ
Database cross-references and differences (RAF-indexed):
- Uniprot L0N6M2 (Start-1039)
Domains in SCOPe 2.07: d6tska1, d6tska2, d6tska3, d6tska4, d6tska5
Chain 'B':
Compound: LacZ protein
Species: Human alphaherpesvirus 1 strain RH2 [TaxId:946522]
Gene: lacZ
Database cross-references and differences (RAF-indexed):
- Uniprot L0N6M2 (Start-1039)
Domains in SCOPe 2.07: d6tskb1, d6tskb2, d6tskb3, d6tskb4, d6tskb5
Chain 'C':
Compound: LacZ protein
Species: Human alphaherpesvirus 1 strain RH2 [TaxId:946522]
Gene: lacZ
Database cross-references and differences (RAF-indexed):
- Uniprot L0N6M2 (Start-1039)
Domains in SCOPe 2.07: d6tskc1, d6tskc2, d6tskc3, d6tskc4, d6tskc5
Chain 'D':
Compound: LacZ protein
Species: Human alphaherpesvirus 1 strain RH2 [TaxId:946522]
Gene: lacZ
Database cross-references and differences (RAF-indexed):
- Uniprot L0N6M2 (Start-1039)
Domains in SCOPe 2.07: d6tskd1, d6tskd2, d6tskd3, d6tskd4, d6tskd5
Heterogens: 0MK, MG, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>6tskA (A:)
mgsshhhhhhssglvprgshmledpvvlqrrdwenpgvtqlnrlaahppfaswrnseear
tdrpsqqlrslngewrfawfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnv
typitvnppfvptenptgcysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygq
dsrlpsefdlsaflragenrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqis
dfhvatrfnddfsravleaevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderg
gyadrvtlrlnvenpklwsaeipnlyravvelhtadgtlieaeacdvgfrevrienglll
lngkpllirgvnrhehhplhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcd
ryglyvvdeaniethgmvpmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesg
hganhdalyrwiksvdpsrpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkw
lslpgetrplilceyahamgnslggfakywqafrqyprlqggfvwdwvdqslikydengn
pwsayggdfgdtpndrqfcmnglvfadrtphpalteakhqqqffqfrlsgqtievtseyl
frhsdnellhwmvaldgkplasgevpldvapqgkqlielpelpqpesagqlwltvrvvqp
natawseaghisawqqwrlaenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsg
flsqmwigdkkqlltplrdqftrapldndigvseatridpnawverwkaaghyqaeaall
qctadtladavlittahawqhqgktlfisrktyridgsgqmaitvdvevasdtphparig
lncqlaqvaervnwlglgpqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtre
lnygphqwrgdfqfnisrysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsv
saefqlsagryhyqlvwcqk

Sequence, based on observed residues (ATOM records): (download)

>6tskA (A:)
vvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfawfpapea
vpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptgcysltfn
vdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflragenrlavmv
lrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravleaevqmcg
elrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklwsaeipnl
yravvelhtadgtlieaeacdvgfrevriengllllngkpllirgvnrhehhplhgqvmd
eqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmvpmnrltd
dprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdpsrpvqyeg
ggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyahamgnslgg
fakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqfcmnglvf
adrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgkplasgev
pldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwrlaenlsv
tlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplrdqftrap
ldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittahawqhqgkt
lfisrktyridgsgqmaitvdvevasdtphpariglncqlaqvaervnwlglgpqenypd
rltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisrysqqqlm
etshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwcqk

Chain 'B':
Sequence, based on SEQRES records: (download)

>6tskB (B:)
mgsshhhhhhssglvprgshmledpvvlqrrdwenpgvtqlnrlaahppfaswrnseear
tdrpsqqlrslngewrfawfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnv
typitvnppfvptenptgcysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygq
dsrlpsefdlsaflragenrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqis
dfhvatrfnddfsravleaevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderg
gyadrvtlrlnvenpklwsaeipnlyravvelhtadgtlieaeacdvgfrevrienglll
lngkpllirgvnrhehhplhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcd
ryglyvvdeaniethgmvpmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesg
hganhdalyrwiksvdpsrpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkw
lslpgetrplilceyahamgnslggfakywqafrqyprlqggfvwdwvdqslikydengn
pwsayggdfgdtpndrqfcmnglvfadrtphpalteakhqqqffqfrlsgqtievtseyl
frhsdnellhwmvaldgkplasgevpldvapqgkqlielpelpqpesagqlwltvrvvqp
natawseaghisawqqwrlaenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsg
flsqmwigdkkqlltplrdqftrapldndigvseatridpnawverwkaaghyqaeaall
qctadtladavlittahawqhqgktlfisrktyridgsgqmaitvdvevasdtphparig
lncqlaqvaervnwlglgpqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtre
lnygphqwrgdfqfnisrysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsv
saefqlsagryhyqlvwcqk

Sequence, based on observed residues (ATOM records): (download)

>6tskB (B:)
vvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfawfpapea
vpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptgcysltfn
vdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflragenrlavmv
lrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravleaevqmcg
elrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklwsaeipnl
yravvelhtadgtlieaeacdvgfrevriengllllngkpllirgvnrhehhplhgqvmd
eqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmvpmnrltd
dprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdpsrpvqyeg
ggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyahamgnslgg
fakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqfcmnglvf
adrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgkplasgev
pldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwrlaenlsv
tlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplrdqftrap
ldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittahawqhqgkt
lfisrktyridgsgqmaitvdvevasdtphpariglncqlaqvaervnwlglgpqenypd
rltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisrysqqqlm
etshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwcqk

Chain 'C':
Sequence, based on SEQRES records: (download)

>6tskC (C:)
mgsshhhhhhssglvprgshmledpvvlqrrdwenpgvtqlnrlaahppfaswrnseear
tdrpsqqlrslngewrfawfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnv
typitvnppfvptenptgcysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygq
dsrlpsefdlsaflragenrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqis
dfhvatrfnddfsravleaevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderg
gyadrvtlrlnvenpklwsaeipnlyravvelhtadgtlieaeacdvgfrevrienglll
lngkpllirgvnrhehhplhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcd
ryglyvvdeaniethgmvpmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesg
hganhdalyrwiksvdpsrpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkw
lslpgetrplilceyahamgnslggfakywqafrqyprlqggfvwdwvdqslikydengn
pwsayggdfgdtpndrqfcmnglvfadrtphpalteakhqqqffqfrlsgqtievtseyl
frhsdnellhwmvaldgkplasgevpldvapqgkqlielpelpqpesagqlwltvrvvqp
natawseaghisawqqwrlaenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsg
flsqmwigdkkqlltplrdqftrapldndigvseatridpnawverwkaaghyqaeaall
qctadtladavlittahawqhqgktlfisrktyridgsgqmaitvdvevasdtphparig
lncqlaqvaervnwlglgpqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtre
lnygphqwrgdfqfnisrysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsv
saefqlsagryhyqlvwcqk

Sequence, based on observed residues (ATOM records): (download)

>6tskC (C:)
vvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfawfpapea
vpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptgcysltfn
vdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflragenrlavmv
lrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravleaevqmcg
elrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklwsaeipnl
yravvelhtadgtlieaeacdvgfrevriengllllngkpllirgvnrhehhplhgqvmd
eqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmvpmnrltd
dprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdpsrpvqyeg
ggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyahamgnslgg
fakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqfcmnglvf
adrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgkplasgev
pldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwrlaenlsv
tlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplrdqftrap
ldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittahawqhqgkt
lfisrktyridgsgqmaitvdvevasdtphpariglncqlaqvaervnwlglgpqenypd
rltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisrysqqqlm
etshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwcqk

Chain 'D':
Sequence, based on SEQRES records: (download)

>6tskD (D:)
mgsshhhhhhssglvprgshmledpvvlqrrdwenpgvtqlnrlaahppfaswrnseear
tdrpsqqlrslngewrfawfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnv
typitvnppfvptenptgcysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygq
dsrlpsefdlsaflragenrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqis
dfhvatrfnddfsravleaevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderg
gyadrvtlrlnvenpklwsaeipnlyravvelhtadgtlieaeacdvgfrevrienglll
lngkpllirgvnrhehhplhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcd
ryglyvvdeaniethgmvpmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesg
hganhdalyrwiksvdpsrpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkw
lslpgetrplilceyahamgnslggfakywqafrqyprlqggfvwdwvdqslikydengn
pwsayggdfgdtpndrqfcmnglvfadrtphpalteakhqqqffqfrlsgqtievtseyl
frhsdnellhwmvaldgkplasgevpldvapqgkqlielpelpqpesagqlwltvrvvqp
natawseaghisawqqwrlaenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsg
flsqmwigdkkqlltplrdqftrapldndigvseatridpnawverwkaaghyqaeaall
qctadtladavlittahawqhqgktlfisrktyridgsgqmaitvdvevasdtphparig
lncqlaqvaervnwlglgpqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtre
lnygphqwrgdfqfnisrysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsv
saefqlsagryhyqlvwcqk

Sequence, based on observed residues (ATOM records): (download)

>6tskD (D:)
vvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfawfpapea
vpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptgcysltfn
vdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflragenrlavmv
lrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravleaevqmcg
elrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklwsaeipnl
yravvelhtadgtlieaeacdvgfrevriengllllngkpllirgvnrhehhplhgqvmd
eqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmvpmnrltd
dprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdpsrpvqyeg
ggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyahamgnslgg
fakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqfcmnglvf
adrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgkplasgev
pldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwrlaenlsv
tlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplrdqftrap
ldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittahawqhqgkt
lfisrktyridgsgqmaitvdvevasdtphpariglncqlaqvaervnwlglgpqenypd
rltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisrysqqqlm
etshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwcqk