PDB entry 6tnn

View 6tnn on RCSB PDB site
Description: Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
Class: ribosomal protein
Keywords: Mini-RNase III, Mini-III, complex, ribosome, 50S, RNA maturation, RNA processing, precursor 23S rRNA, pre-23S rRNA, 23S rRNA, L3, Ribosomal protein, RNase III-like fold, RNase
Deposited on 2019-12-09, released 2020-09-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-10-14, with a file datestamp of 2020-10-09.
Experiment type: EM
Resolution: 3.07 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'H':
  Compound: Mini-ribonuclease 3
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Gene: mrnC, yazC, BSU00950
  Database cross-references and differences (RAF-indexed):
  • Uniprot O31418
    • conflict (22)
  Domains in SCOPe 2.07: d6tnnh_
• Chain 'I':
  Compound: Mini-ribonuclease 3
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Gene: mrnC, yazC, BSU00950
  Database cross-references and differences (RAF-indexed):
  • Uniprot O31418 (0-End)
    • conflict (22)
  Domains in SCOPe 2.07: d6tnni_
• Chain 'U':
  Compound: pre-23S rRNA
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  
• Chain 'V':
  Compound: 5s rRNA
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  
• Chain 'W':
  Compound: 50S ribosomal protein L2
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P42919
• Chain 'X':
  Compound: 50S ribosomal protein L3
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P42920
• Chain 'Y':
  Compound: 50S ribosomal protein L4
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P42921
• Chain 'Z':
  Compound: 50S ribosomal protein L5
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12877 (Start-178)
• Chain 'a':
  Compound: 50S ribosomal protein L6
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P46898
• Chain 'b':
  Compound: 50s ribosomal protein l10
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P42923
• Chain 'c':
  Compound: 50S ribosomal protein L13
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P70974 (Start-144)
• Chain 'd':
  Compound: 50S ribosomal protein L14
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12875 (0-121)
• Chain 'e':
  Compound: 50S ribosomal protein L15
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P19946 (0-145)
• Chain 'f':
  Compound: 50S ribosomal protein L16
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P14577 (0-End)
• Chain 'g':
  Compound: 50S ribosomal protein L17
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P20277 (Start-119)
• Chain 'h':
  Compound: 50S ribosomal protein L18
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P46899 (0-119)
• Chain 'i':
  Compound: 50S ribosomal protein L19
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot O31742 (Start-114)
• Chain 'j':
  Compound: 50S ribosomal protein L20
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P55873
• Chain 'k':
  Compound: 50S ribosomal protein L21
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P26908 (Start-101)
• Chain 'l':
  Compound: 50S ribosomal protein L22
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P42060
• Chain 'm':
  Compound: 50S ribosomal protein L23
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P42924 (0-End)
• Chain 'n':
  Compound: 50S ribosomal protein L24
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CI78 (0-End)
• Chain 'o':
  Compound: 50S ribosomal protein L27
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P05657
• Chain 'p':
  Compound: 50S ribosomal protein L32
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot O34687
• Chain 'q':
  Compound: 50S ribosomal protein L33 1
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P56849 (0-End)
• Chain 'r':
  Compound: 50S ribosomal protein L34
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P05647 (0-43)
• Chain 's':
  Compound: 50S ribosomal protein L35
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P55874
• Chain 't':
  Compound: 50S ribosomal protein L36
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P20278 (Start-36)
• Chain 'u':
  Compound: 50S ribosomal protein L28
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P37807
• Chain 'v':
  Compound: 50S ribosomal protein L29
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12873 (0-End)
• Chain 'w':
  Compound: 50S ribosomal protein L30
  Species: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 [TaxId:224308]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P19947 (Start-58)
• Heterogens: MG, ZN

PDB Chain Sequences:

• Chain 'H':
  Sequence, based on SEQRES records: (download)
  

  >6tnnH (H:)
  mlefdtikdskqlnglalayignaifevyvrhhllkqgftkpndlhkkssrivsaksqae
  ilfflqnqsffteeeeavlkrgrnaksgttpkntdvqtyrystafeallgylflekkeer
  lsqlvaeaiqfgtsgrktnesat
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6tnnH (H:)
  efdtikdskqlnglalayignaifevyvrhhllkqgftkpndlhkkssrivsaksqaeil
  fflqnqsffteeeeavlkrgrnaksgttpkntdvqtyrystafeallgylflekkeerls
  qlvaeaiqfgts
  

  
  
• Chain 'I':
  Sequence, based on SEQRES records: (download)
  

  >6tnnI (I:)
  mlefdtikdskqlnglalayignaifevyvrhhllkqgftkpndlhkkssrivsaksqae
  ilfflqnqsffteeeeavlkrgrnaksgttpkntdvqtyrystafeallgylflekkeer
  lsqlvaeaiqfgtsgrktnesat
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6tnnI (I:)
  mlefdtikdskqlnglalayignaifevyvrhhllkqgftkpndlhkkssrivsaksqae
  ilfflqnqsffteeeeavlkrgrnaksgttpkntdvqtyrystafeallgylflekkeer
  lsqlvaeaiqfgts
  

  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'V':
  No sequence available.
  
  
• Chain 'W':
  No sequence available.
  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Y':
  No sequence available.
  
  
• Chain 'Z':
  No sequence available.
  
  
• Chain 'a':
  No sequence available.
  
  
• Chain 'b':
  No sequence available.
  
  
• Chain 'c':
  No sequence available.
  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'g':
  No sequence available.
  
  
• Chain 'h':
  No sequence available.
  
  
• Chain 'i':
  No sequence available.
  
  
• Chain 'j':
  No sequence available.
  
  
• Chain 'k':
  No sequence available.
  
  
• Chain 'l':
  No sequence available.
  
  
• Chain 'm':
  No sequence available.
  
  
• Chain 'n':
  No sequence available.
  
  
• Chain 'o':
  No sequence available.
  
  
• Chain 'p':
  No sequence available.
  
  
• Chain 'q':
  No sequence available.
  
  
• Chain 'r':
  No sequence available.
  
  
• Chain 's':
  No sequence available.
  
  
• Chain 't':
  No sequence available.
  
  
• Chain 'u':
  No sequence available.
  
  
• Chain 'v':
  No sequence available.
  
  
• Chain 'w':
  No sequence available.