PDB entry 6tik

View 6tik on RCSB PDB site
Description: hepatitis b virus core shell--virus-like particle with nada epitope
Deposited on 2019-11-22, released 2020-04-29
The last revision was dated 2020-04-29, with a file datestamp of 2020-04-24.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein,Putative adhesin/invasin,Capsid protein,Factor H-binding protein
    Species: Neisseria meningitidis [TaxId:487]
    Gene: gna1870, fhbp
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Capsid protein,Putative adhesin/invasin,Capsid protein,Factor H-binding protein
    Species: Neisseria meningitidis [TaxId:487]
    Gene: gna1870, fhbp
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Capsid protein,Putative adhesin/invasin,Capsid protein,Factor H-binding protein
    Species: Neisseria meningitidis [TaxId:487]
    Gene: gna1870, fhbp
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Capsid protein,Putative adhesin/invasin,Capsid protein,Factor H-binding protein
    Species: Neisseria meningitidis [TaxId:487]
    Gene: gna1870, fhbp
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6tikA (A:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnledggggsggggsatsdddvkkaatvaivaaynngqeingfkage
tiydigedgtitqkdataadveaddfkglglkkvvtnltktvnenkqnvdakvkaaesei
eklttkladtdaaladtdaaldettnalnklgenittfaeetktnivkidekleavadtv
dkhaeafndiadsldetntkadeavktaneakqtaeetkqnvdakvkaaetaagkaeaaa
gtantaadkaeavaakvtdikadiatnkadiaknsaridsldknvanlrketrqglaeqa
alsglfqpynvgefggggsggggsrdlvvnyvntnmglkirqllwfhiscltfgretvle
ylvsfgvwirtppayrppnapilstlpettvvgsgggthtsfdklpeggratyrgtafgs
ddaggkltytidfaakqgngkiehlkspelnvdlaaadikpdgkrhavisgsvlynqaek
gsyslgifggkaqevagsaevktvngirhiglaakqklgggwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6tikA (A:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnlrdlvvnyvntnmglkirqllwfhiscltfgretvleylvsfgvw
irtppayrppnapilst

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6tikB (B:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnledggggsggggsatsdddvkkaatvaivaaynngqeingfkage
tiydigedgtitqkdataadveaddfkglglkkvvtnltktvnenkqnvdakvkaaesei
eklttkladtdaaladtdaaldettnalnklgenittfaeetktnivkidekleavadtv
dkhaeafndiadsldetntkadeavktaneakqtaeetkqnvdakvkaaetaagkaeaaa
gtantaadkaeavaakvtdikadiatnkadiaknsaridsldknvanlrketrqglaeqa
alsglfqpynvgefggggsggggsrdlvvnyvntnmglkirqllwfhiscltfgretvle
ylvsfgvwirtppayrppnapilstlpettvvgsgggthtsfdklpeggratyrgtafgs
ddaggkltytidfaakqgngkiehlkspelnvdlaaadikpdgkrhavisgsvlynqaek
gsyslgifggkaqevagsaevktvngirhiglaakqklgggwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6tikB (B:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnlrdlvvnyvntnmglkirqllwfhiscltfgretvleylvsfgvw
irtppayrppnapilstl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6tikC (C:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnledggggsggggsatsdddvkkaatvaivaaynngqeingfkage
tiydigedgtitqkdataadveaddfkglglkkvvtnltktvnenkqnvdakvkaaesei
eklttkladtdaaladtdaaldettnalnklgenittfaeetktnivkidekleavadtv
dkhaeafndiadsldetntkadeavktaneakqtaeetkqnvdakvkaaetaagkaeaaa
gtantaadkaeavaakvtdikadiatnkadiaknsaridsldknvanlrketrqglaeqa
alsglfqpynvgefggggsggggsrdlvvnyvntnmglkirqllwfhiscltfgretvle
ylvsfgvwirtppayrppnapilstlpettvvgsgggthtsfdklpeggratyrgtafgs
ddaggkltytidfaakqgngkiehlkspelnvdlaaadikpdgkrhavisgsvlynqaek
gsyslgifggkaqevagsaevktvngirhiglaakqklgggwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6tikC (C:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnlrdlvvnyvntnmglkirqllwfhiscltfgretvleylvsfgvw
irtppayrppnapilst

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6tikD (D:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnledggggsggggsatsdddvkkaatvaivaaynngqeingfkage
tiydigedgtitqkdataadveaddfkglglkkvvtnltktvnenkqnvdakvkaaesei
eklttkladtdaaladtdaaldettnalnklgenittfaeetktnivkidekleavadtv
dkhaeafndiadsldetntkadeavktaneakqtaeetkqnvdakvkaaetaagkaeaaa
gtantaadkaeavaakvtdikadiatnkadiaknsaridsldknvanlrketrqglaeqa
alsglfqpynvgefggggsggggsrdlvvnyvntnmglkirqllwfhiscltfgretvle
ylvsfgvwirtppayrppnapilstlpettvvgsgggthtsfdklpeggratyrgtafgs
ddaggkltytidfaakqgngkiehlkspelnvdlaaadikpdgkrhavisgsvlynqaek
gsyslgifggkaqevagsaevktvngirhiglaakqklgggwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6tikD (D:)
mdidpykefgatvellsflpsdffpsvrdlldtasalyrealespehcsphhtalrqail
cwgelmtlatwvgnnlrdlvvnyvntnmglkirqllwfhiscltfgretvleylvsfgvw
irtppayrppnapilstl